miRNA display CGI


Results 21 - 40 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12489 5' -57.5 NC_003324.1 + 49882 0.69 0.432359
Target:  5'- aAGGCGGGgaGCGuCUUGCUGUCGAUGc -3'
miRNA:   3'- -UCUGCUCg-CGCuGGACGGCGGUUACu -5'
12489 5' -57.5 NC_003324.1 + 18334 0.69 0.422936
Target:  5'- -aGCGGuCGCGGCuCUGUCGUCGAUGGc -3'
miRNA:   3'- ucUGCUcGCGCUG-GACGGCGGUUACU- -5'
12489 5' -57.5 NC_003324.1 + 5543 0.69 0.422936
Target:  5'- gGGGCGGGCGaCGccGCCUGCCuacccagcGUCGAUGc -3'
miRNA:   3'- -UCUGCUCGC-GC--UGGACGG--------CGGUUACu -5'
12489 5' -57.5 NC_003324.1 + 12704 0.69 0.395425
Target:  5'- cAGAUauGCGCcguuGAUCUGcCCGCCGAUGAu -3'
miRNA:   3'- -UCUGcuCGCG----CUGGAC-GGCGGUUACU- -5'
12489 5' -57.5 NC_003324.1 + 48689 0.69 0.395425
Target:  5'- -uGCGGGCGcCGACCUGCgUGUCGAUuGGg -3'
miRNA:   3'- ucUGCUCGC-GCUGGACG-GCGGUUA-CU- -5'
12489 5' -57.5 NC_003324.1 + 53999 0.69 0.395425
Target:  5'- cGGCGaAGCGC-ACUUGCCGCgCuGAUGAu -3'
miRNA:   3'- uCUGC-UCGCGcUGGACGGCG-G-UUACU- -5'
12489 5' -57.5 NC_003324.1 + 8216 0.7 0.369096
Target:  5'- cAGuCGAGCGCGcAgCUGCCcgGCgGGUGAg -3'
miRNA:   3'- -UCuGCUCGCGC-UgGACGG--CGgUUACU- -5'
12489 5' -57.5 NC_003324.1 + 12424 0.68 0.471228
Target:  5'- uGcCGAGCGCGGCaaUGCCGaCAAUGu -3'
miRNA:   3'- uCuGCUCGCGCUGg-ACGGCgGUUACu -5'
12489 5' -57.5 NC_003324.1 + 33519 0.67 0.511792
Target:  5'- cGGCGAGCGUuACacgGacaaCGCCGAUGAa -3'
miRNA:   3'- uCUGCUCGCGcUGga-Cg---GCGGUUACU- -5'
12489 5' -57.5 NC_003324.1 + 45534 0.67 0.522162
Target:  5'- -aACGGGaau-ACCUGCCGCCAGUGu -3'
miRNA:   3'- ucUGCUCgcgcUGGACGGCGGUUACu -5'
12489 5' -57.5 NC_003324.1 + 26534 0.66 0.596628
Target:  5'- uGAUGucGC-CGACaUUGCCGUCGAUGAa -3'
miRNA:   3'- uCUGCu-CGcGCUG-GACGGCGGUUACU- -5'
12489 5' -57.5 NC_003324.1 + 15115 0.66 0.595547
Target:  5'- uGGCGuccuGCGCcaugaucGACCUGCCGUCGc--- -3'
miRNA:   3'- uCUGCu---CGCG-------CUGGACGGCGGUuacu -5'
12489 5' -57.5 NC_003324.1 + 17493 0.66 0.585839
Target:  5'- cGACGAGgGCGACgUGgCaCGCgGAcuUGAg -3'
miRNA:   3'- uCUGCUCgCGCUGgAC-G-GCGgUU--ACU- -5'
12489 5' -57.5 NC_003324.1 + 40314 0.66 0.575087
Target:  5'- cAGuCGAGCGgGAgCCaGCaccgaaGCCGGUGAa -3'
miRNA:   3'- -UCuGCUCGCgCU-GGaCGg-----CGGUUACU- -5'
12489 5' -57.5 NC_003324.1 + 30361 0.66 0.568658
Target:  5'- cGGCGGcuuGgGCGACCgUGCCuuggcccgcaucaucGCCGAUGGu -3'
miRNA:   3'- uCUGCU---CgCGCUGG-ACGG---------------CGGUUACU- -5'
12489 5' -57.5 NC_003324.1 + 16427 0.66 0.564382
Target:  5'- uGGACGA-CGCGAUCgacggcaacGCCGUCGcgGAc -3'
miRNA:   3'- -UCUGCUcGCGCUGGa--------CGGCGGUuaCU- -5'
12489 5' -57.5 NC_003324.1 + 43013 0.67 0.543137
Target:  5'- gGGACGAGacCGcCGGCgCagUGaCCGCCAAUGGu -3'
miRNA:   3'- -UCUGCUC--GC-GCUG-G--AC-GGCGGUUACU- -5'
12489 5' -57.5 NC_003324.1 + 24915 0.67 0.532613
Target:  5'- aAGACGgccgaccuugucGGCGCGAUCcGCCuGCCGAa-- -3'
miRNA:   3'- -UCUGC------------UCGCGCUGGaCGG-CGGUUacu -5'
12489 5' -57.5 NC_003324.1 + 49261 0.67 0.532613
Target:  5'- cGAgGAGC-CGAUCgagGCUGUCGAUGGu -3'
miRNA:   3'- uCUgCUCGcGCUGGa--CGGCGGUUACU- -5'
12489 5' -57.5 NC_003324.1 + 23628 0.74 0.213903
Target:  5'- cGcCGAGCGCG-CCcGCCGCCAcgcuGUGGg -3'
miRNA:   3'- uCuGCUCGCGCuGGaCGGCGGU----UACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.