Results 21 - 40 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12489 | 5' | -57.5 | NC_003324.1 | + | 26534 | 0.66 | 0.596628 |
Target: 5'- uGAUGucGC-CGACaUUGCCGUCGAUGAa -3' miRNA: 3'- uCUGCu-CGcGCUG-GACGGCGGUUACU- -5' |
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12489 | 5' | -57.5 | NC_003324.1 | + | 30361 | 0.66 | 0.568658 |
Target: 5'- cGGCGGcuuGgGCGACCgUGCCuuggcccgcaucaucGCCGAUGGu -3' miRNA: 3'- uCUGCU---CgCGCUGG-ACGG---------------CGGUUACU- -5' |
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12489 | 5' | -57.5 | NC_003324.1 | + | 30762 | 0.68 | 0.471228 |
Target: 5'- aAGcACGGGCGCGGuCCUG-CGCCGu--- -3' miRNA: 3'- -UC-UGCUCGCGCU-GGACgGCGGUuacu -5' |
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12489 | 5' | -57.5 | NC_003324.1 | + | 33519 | 0.67 | 0.511792 |
Target: 5'- cGGCGAGCGUuACacgGacaaCGCCGAUGAa -3' miRNA: 3'- uCUGCUCGCGcUGga-Cg---GCGGUUACU- -5' |
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12489 | 5' | -57.5 | NC_003324.1 | + | 40314 | 0.66 | 0.575087 |
Target: 5'- cAGuCGAGCGgGAgCCaGCaccgaaGCCGGUGAa -3' miRNA: 3'- -UCuGCUCGCgCU-GGaCGg-----CGGUUACU- -5' |
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12489 | 5' | -57.5 | NC_003324.1 | + | 40529 | 0.66 | 0.607446 |
Target: 5'- cGAuCGAGCGCGGCgaGaaGCCucUGGu -3' miRNA: 3'- uCU-GCUCGCGCUGgaCggCGGuuACU- -5' |
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12489 | 5' | -57.5 | NC_003324.1 | + | 42297 | 0.69 | 0.395425 |
Target: 5'- --cUGAGUGCGccGCCUGCCacgugccgggcGCCGGUGAc -3' miRNA: 3'- ucuGCUCGCGC--UGGACGG-----------CGGUUACU- -5' |
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12489 | 5' | -57.5 | NC_003324.1 | + | 43013 | 0.67 | 0.543137 |
Target: 5'- gGGACGAGacCGcCGGCgCagUGaCCGCCAAUGGu -3' miRNA: 3'- -UCUGCUC--GC-GCUG-G--AC-GGCGGUUACU- -5' |
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12489 | 5' | -57.5 | NC_003324.1 | + | 43639 | 0.68 | 0.471228 |
Target: 5'- uGACGuuGCGCGGCgUGUgGCUGAUGc -3' miRNA: 3'- uCUGCu-CGCGCUGgACGgCGGUUACu -5' |
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12489 | 5' | -57.5 | NC_003324.1 | + | 45534 | 0.67 | 0.522162 |
Target: 5'- -aACGGGaau-ACCUGCCGCCAGUGu -3' miRNA: 3'- ucUGCUCgcgcUGGACGGCGGUUACu -5' |
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12489 | 5' | -57.5 | NC_003324.1 | + | 48689 | 0.69 | 0.395425 |
Target: 5'- -uGCGGGCGcCGACCUGCgUGUCGAUuGGg -3' miRNA: 3'- ucUGCUCGC-GCUGGACG-GCGGUUA-CU- -5' |
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12489 | 5' | -57.5 | NC_003324.1 | + | 49261 | 0.67 | 0.532613 |
Target: 5'- cGAgGAGC-CGAUCgagGCUGUCGAUGGu -3' miRNA: 3'- uCUgCUCGcGCUGGa--CGGCGGUUACU- -5' |
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12489 | 5' | -57.5 | NC_003324.1 | + | 49882 | 0.69 | 0.432359 |
Target: 5'- aAGGCGGGgaGCGuCUUGCUGUCGAUGc -3' miRNA: 3'- -UCUGCUCg-CGCuGGACGGCGGUUACu -5' |
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12489 | 5' | -57.5 | NC_003324.1 | + | 52248 | 0.66 | 0.575087 |
Target: 5'- cGGCcAGUuCGuCCUGCCGCCGAaGAc -3' miRNA: 3'- uCUGcUCGcGCuGGACGGCGGUUaCU- -5' |
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12489 | 5' | -57.5 | NC_003324.1 | + | 52977 | 1.09 | 0.000621 |
Target: 5'- gAGACGAGCGCGACCUGCCGCCAAUGAa -3' miRNA: 3'- -UCUGCUCGCGCUGGACGGCGGUUACU- -5' |
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12489 | 5' | -57.5 | NC_003324.1 | + | 53999 | 0.69 | 0.395425 |
Target: 5'- cGGCGaAGCGC-ACUUGCCGCgCuGAUGAu -3' miRNA: 3'- uCUGC-UCGCGcUGGACGGCG-G-UUACU- -5' |
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12489 | 5' | -57.5 | NC_003324.1 | + | 56508 | 0.69 | 0.404467 |
Target: 5'- aGGAUGAGCGCGGCgCUG-CGCaCAAc-- -3' miRNA: 3'- -UCUGCUCGCGCUG-GACgGCG-GUUacu -5' |
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12489 | 5' | -57.5 | NC_003324.1 | + | 56549 | 0.69 | 0.441903 |
Target: 5'- cGGGCGAaguugccCGCGACCcaUGCCGCCGc--- -3' miRNA: 3'- -UCUGCUc------GCGCUGG--ACGGCGGUuacu -5' |
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12489 | 5' | -57.5 | NC_003324.1 | + | 56883 | 0.67 | 0.543137 |
Target: 5'- cGACG-GCGUGACCgaauuccCCGgCAAUGGa -3' miRNA: 3'- uCUGCuCGCGCUGGac-----GGCgGUUACU- -5' |
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12489 | 5' | -57.5 | NC_003324.1 | + | 57160 | 0.68 | 0.501509 |
Target: 5'- cGACuGAGUGCGaagccaaggGCCUGCCGCuCAcaGAc -3' miRNA: 3'- uCUG-CUCGCGC---------UGGACGGCG-GUuaCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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