miRNA display CGI


Results 21 - 40 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12489 5' -57.5 NC_003324.1 + 26534 0.66 0.596628
Target:  5'- uGAUGucGC-CGACaUUGCCGUCGAUGAa -3'
miRNA:   3'- uCUGCu-CGcGCUG-GACGGCGGUUACU- -5'
12489 5' -57.5 NC_003324.1 + 30361 0.66 0.568658
Target:  5'- cGGCGGcuuGgGCGACCgUGCCuuggcccgcaucaucGCCGAUGGu -3'
miRNA:   3'- uCUGCU---CgCGCUGG-ACGG---------------CGGUUACU- -5'
12489 5' -57.5 NC_003324.1 + 30762 0.68 0.471228
Target:  5'- aAGcACGGGCGCGGuCCUG-CGCCGu--- -3'
miRNA:   3'- -UC-UGCUCGCGCU-GGACgGCGGUuacu -5'
12489 5' -57.5 NC_003324.1 + 33519 0.67 0.511792
Target:  5'- cGGCGAGCGUuACacgGacaaCGCCGAUGAa -3'
miRNA:   3'- uCUGCUCGCGcUGga-Cg---GCGGUUACU- -5'
12489 5' -57.5 NC_003324.1 + 40314 0.66 0.575087
Target:  5'- cAGuCGAGCGgGAgCCaGCaccgaaGCCGGUGAa -3'
miRNA:   3'- -UCuGCUCGCgCU-GGaCGg-----CGGUUACU- -5'
12489 5' -57.5 NC_003324.1 + 40529 0.66 0.607446
Target:  5'- cGAuCGAGCGCGGCgaGaaGCCucUGGu -3'
miRNA:   3'- uCU-GCUCGCGCUGgaCggCGGuuACU- -5'
12489 5' -57.5 NC_003324.1 + 42297 0.69 0.395425
Target:  5'- --cUGAGUGCGccGCCUGCCacgugccgggcGCCGGUGAc -3'
miRNA:   3'- ucuGCUCGCGC--UGGACGG-----------CGGUUACU- -5'
12489 5' -57.5 NC_003324.1 + 43013 0.67 0.543137
Target:  5'- gGGACGAGacCGcCGGCgCagUGaCCGCCAAUGGu -3'
miRNA:   3'- -UCUGCUC--GC-GCUG-G--AC-GGCGGUUACU- -5'
12489 5' -57.5 NC_003324.1 + 43639 0.68 0.471228
Target:  5'- uGACGuuGCGCGGCgUGUgGCUGAUGc -3'
miRNA:   3'- uCUGCu-CGCGCUGgACGgCGGUUACu -5'
12489 5' -57.5 NC_003324.1 + 45534 0.67 0.522162
Target:  5'- -aACGGGaau-ACCUGCCGCCAGUGu -3'
miRNA:   3'- ucUGCUCgcgcUGGACGGCGGUUACu -5'
12489 5' -57.5 NC_003324.1 + 48689 0.69 0.395425
Target:  5'- -uGCGGGCGcCGACCUGCgUGUCGAUuGGg -3'
miRNA:   3'- ucUGCUCGC-GCUGGACG-GCGGUUA-CU- -5'
12489 5' -57.5 NC_003324.1 + 49261 0.67 0.532613
Target:  5'- cGAgGAGC-CGAUCgagGCUGUCGAUGGu -3'
miRNA:   3'- uCUgCUCGcGCUGGa--CGGCGGUUACU- -5'
12489 5' -57.5 NC_003324.1 + 49882 0.69 0.432359
Target:  5'- aAGGCGGGgaGCGuCUUGCUGUCGAUGc -3'
miRNA:   3'- -UCUGCUCg-CGCuGGACGGCGGUUACu -5'
12489 5' -57.5 NC_003324.1 + 52248 0.66 0.575087
Target:  5'- cGGCcAGUuCGuCCUGCCGCCGAaGAc -3'
miRNA:   3'- uCUGcUCGcGCuGGACGGCGGUUaCU- -5'
12489 5' -57.5 NC_003324.1 + 52977 1.09 0.000621
Target:  5'- gAGACGAGCGCGACCUGCCGCCAAUGAa -3'
miRNA:   3'- -UCUGCUCGCGCUGGACGGCGGUUACU- -5'
12489 5' -57.5 NC_003324.1 + 53999 0.69 0.395425
Target:  5'- cGGCGaAGCGC-ACUUGCCGCgCuGAUGAu -3'
miRNA:   3'- uCUGC-UCGCGcUGGACGGCG-G-UUACU- -5'
12489 5' -57.5 NC_003324.1 + 56508 0.69 0.404467
Target:  5'- aGGAUGAGCGCGGCgCUG-CGCaCAAc-- -3'
miRNA:   3'- -UCUGCUCGCGCUG-GACgGCG-GUUacu -5'
12489 5' -57.5 NC_003324.1 + 56549 0.69 0.441903
Target:  5'- cGGGCGAaguugccCGCGACCcaUGCCGCCGc--- -3'
miRNA:   3'- -UCUGCUc------GCGCUGG--ACGGCGGUuacu -5'
12489 5' -57.5 NC_003324.1 + 56883 0.67 0.543137
Target:  5'- cGACG-GCGUGACCgaauuccCCGgCAAUGGa -3'
miRNA:   3'- uCUGCuCGCGCUGGac-----GGCgGUUACU- -5'
12489 5' -57.5 NC_003324.1 + 57160 0.68 0.501509
Target:  5'- cGACuGAGUGCGaagccaaggGCCUGCCGCuCAcaGAc -3'
miRNA:   3'- uCUG-CUCGCGC---------UGGACGGCG-GUuaCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.