Results 41 - 60 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12490 | 5' | -58.3 | NC_003324.1 | + | 22202 | 0.68 | 0.414972 |
Target: 5'- aCGGUGauGUuGGUGgGCUUgcCGCCGCg -3' miRNA: 3'- aGUCGCgcCGuUCACgCGAA--GCGGCG- -5' |
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12490 | 5' | -58.3 | NC_003324.1 | + | 32296 | 0.68 | 0.405821 |
Target: 5'- -uGGCGacaaCGGCcucUGCGCggCGCCGCa -3' miRNA: 3'- agUCGC----GCCGuucACGCGaaGCGGCG- -5' |
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12490 | 5' | -58.3 | NC_003324.1 | + | 42098 | 0.68 | 0.452805 |
Target: 5'- aUCAGCaGgGGcCGGGaGCGCUUCGCacucguCGCc -3' miRNA: 3'- -AGUCG-CgCC-GUUCaCGCGAAGCG------GCG- -5' |
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12490 | 5' | -58.3 | NC_003324.1 | + | 36119 | 0.68 | 0.414972 |
Target: 5'- --uGCGCaGCAAGUGCGCggCGaaaagacccUCGCg -3' miRNA: 3'- aguCGCGcCGUUCACGCGaaGC---------GGCG- -5' |
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12490 | 5' | -58.3 | NC_003324.1 | + | 12139 | 0.68 | 0.405821 |
Target: 5'- uUUGGCuGCGGUAuaUGCGCUgCGUCGUg -3' miRNA: 3'- -AGUCG-CGCCGUucACGCGAaGCGGCG- -5' |
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12490 | 5' | -58.3 | NC_003324.1 | + | 53884 | 0.69 | 0.387904 |
Target: 5'- aCAaUGgGGCcuGGUGCGCccCGCCGCa -3' miRNA: 3'- aGUcGCgCCGu-UCACGCGaaGCGGCG- -5' |
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12490 | 5' | -58.3 | NC_003324.1 | + | 48513 | 0.69 | 0.351187 |
Target: 5'- cUCGGCGCGGCGcucuucgaugaggcGGUgaaGCGUUccaagGCCGCa -3' miRNA: 3'- -AGUCGCGCCGU--------------UCA---CGCGAag---CGGCG- -5' |
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12490 | 5' | -58.3 | NC_003324.1 | + | 54004 | 0.69 | 0.379143 |
Target: 5'- gCAG-GCGGCGAa-GCGCacUUGCCGCg -3' miRNA: 3'- aGUCgCGCCGUUcaCGCGa-AGCGGCG- -5' |
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12490 | 5' | -58.3 | NC_003324.1 | + | 37513 | 0.69 | 0.379143 |
Target: 5'- cUguGCGCGGCAA-UGCGC-UCGauaGCa -3' miRNA: 3'- -AguCGCGCCGUUcACGCGaAGCgg-CG- -5' |
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12490 | 5' | -58.3 | NC_003324.1 | + | 42633 | 0.69 | 0.391446 |
Target: 5'- gUCAuUGCGGCAagcacgacuggcaauGGUGC-CUUUGCCGUu -3' miRNA: 3'- -AGUcGCGCCGU---------------UCACGcGAAGCGGCG- -5' |
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12490 | 5' | -58.3 | NC_003324.1 | + | 54538 | 0.69 | 0.396798 |
Target: 5'- -gGGCG-GGCAAGcuuucCGCUcUCGCCGCc -3' miRNA: 3'- agUCGCgCCGUUCac---GCGA-AGCGGCG- -5' |
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12490 | 5' | -58.3 | NC_003324.1 | + | 3246 | 0.7 | 0.344634 |
Target: 5'- aUCGGCGCGGUGccGGUGCuuucggaGC-UCGCCa- -3' miRNA: 3'- -AGUCGCGCCGU--UCACG-------CGaAGCGGcg -5' |
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12490 | 5' | -58.3 | NC_003324.1 | + | 18047 | 0.7 | 0.337367 |
Target: 5'- aUAG-GCGGCGAGUGCcgucaCUUCGCgGUu -3' miRNA: 3'- aGUCgCGCCGUUCACGc----GAAGCGgCG- -5' |
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12490 | 5' | -58.3 | NC_003324.1 | + | 47657 | 0.7 | 0.337367 |
Target: 5'- -gAGCuGUGGCAcgccGGUGCGCUggacaguuccgUCGgCGCg -3' miRNA: 3'- agUCG-CGCCGU----UCACGCGA-----------AGCgGCG- -5' |
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12490 | 5' | -58.3 | NC_003324.1 | + | 49904 | 0.7 | 0.329425 |
Target: 5'- gUCGGCGC-GCucGUGCucgcCUUCGCUGCc -3' miRNA: 3'- -AGUCGCGcCGuuCACGc---GAAGCGGCG- -5' |
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12490 | 5' | -58.3 | NC_003324.1 | + | 1517 | 0.7 | 0.321621 |
Target: 5'- cCAGCgaggauccgGCGGCAguGGUGCGCggCGCUa- -3' miRNA: 3'- aGUCG---------CGCCGU--UCACGCGaaGCGGcg -5' |
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12490 | 5' | -58.3 | NC_003324.1 | + | 41767 | 0.7 | 0.340583 |
Target: 5'- aUUGGCGCaucgcuaccguuGGCAcAGUGCGCgucggcuacgucgCGCCGCc -3' miRNA: 3'- -AGUCGCG------------CCGU-UCACGCGaa-----------GCGGCG- -5' |
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12490 | 5' | -58.3 | NC_003324.1 | + | 38171 | 0.7 | 0.321621 |
Target: 5'- cCAGCaCGGCGccgacGCGCUUCGCCa- -3' miRNA: 3'- aGUCGcGCCGUuca--CGCGAAGCGGcg -5' |
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12490 | 5' | -58.3 | NC_003324.1 | + | 53061 | 0.71 | 0.306431 |
Target: 5'- uUCAuugGCGGCAGGUcGCGCUcgucUCGgCGCg -3' miRNA: 3'- -AGUcg-CGCCGUUCA-CGCGA----AGCgGCG- -5' |
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12490 | 5' | -58.3 | NC_003324.1 | + | 4730 | 0.72 | 0.238721 |
Target: 5'- uUCAuGaCGCaGacguAGUGCGCUUCGCCGUu -3' miRNA: 3'- -AGU-C-GCGcCgu--UCACGCGAAGCGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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