miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12490 5' -58.3 NC_003324.1 + 35463 0.67 0.512849
Target:  5'- gUCGGCGauguCGGCGAGcguggggacgGCGa-UCGCCGUa -3'
miRNA:   3'- -AGUCGC----GCCGUUCa---------CGCgaAGCGGCG- -5'
12490 5' -58.3 NC_003324.1 + 46319 0.67 0.502599
Target:  5'- aCAGCucGCGaGCGcGGUGgGCUcUGCCGUg -3'
miRNA:   3'- aGUCG--CGC-CGU-UCACgCGAaGCGGCG- -5'
12490 5' -58.3 NC_003324.1 + 42530 0.67 0.499542
Target:  5'- gUCAGCaaCGGCAaaggcaccauugccAGUcGUGCUU-GCCGCa -3'
miRNA:   3'- -AGUCGc-GCCGU--------------UCA-CGCGAAgCGGCG- -5'
12490 5' -58.3 NC_003324.1 + 39461 0.67 0.502599
Target:  5'- -gAGcCGCaGGCAAGc-UGCUUCGCCGg -3'
miRNA:   3'- agUC-GCG-CCGUUCacGCGAAGCGGCg -5'
12490 5' -58.3 NC_003324.1 + 57031 0.67 0.502599
Target:  5'- -gAGCgGCGGCGAGgGCGCggaUGCCu- -3'
miRNA:   3'- agUCG-CGCCGUUCaCGCGaa-GCGGcg -5'
12490 5' -58.3 NC_003324.1 + 37573 0.67 0.482376
Target:  5'- gUAGCGUGcGCAAGaaGCGCUaccagUCGCC-Ca -3'
miRNA:   3'- aGUCGCGC-CGUUCa-CGCGA-----AGCGGcG- -5'
12490 5' -58.3 NC_003324.1 + 56638 0.67 0.462554
Target:  5'- -gGGCgGCGGCAugGGUcGCGggcaaCUUCGcCCGCa -3'
miRNA:   3'- agUCG-CGCCGU--UCA-CGC-----GAAGC-GGCG- -5'
12490 5' -58.3 NC_003324.1 + 32486 0.67 0.482376
Target:  5'- gUguGCGCGGUAAGaGCGC---GCCGa -3'
miRNA:   3'- -AguCGCGCCGUUCaCGCGaagCGGCg -5'
12490 5' -58.3 NC_003324.1 + 2367 0.67 0.512849
Target:  5'- gCAGCccgcccgcaGgGGCGGGU-CGCggUCGCUGCg -3'
miRNA:   3'- aGUCG---------CgCCGUUCAcGCGa-AGCGGCG- -5'
12490 5' -58.3 NC_003324.1 + 7776 0.67 0.482376
Target:  5'- -aGGCGCGaucGCAAc-GgGCUUUGCCGCc -3'
miRNA:   3'- agUCGCGC---CGUUcaCgCGAAGCGGCG- -5'
12490 5' -58.3 NC_003324.1 + 34906 0.67 0.469444
Target:  5'- gUCGGC-CGGCAGGauccacguugccgGCGCUccugcucuucaucugCGCCGCc -3'
miRNA:   3'- -AGUCGcGCCGUUCa------------CGCGAa--------------GCGGCG- -5'
12490 5' -58.3 NC_003324.1 + 49417 0.67 0.462554
Target:  5'- aUCGGCGagccCGGCAGcgGCGCUUgGCUGa -3'
miRNA:   3'- -AGUCGC----GCCGUUcaCGCGAAgCGGCg -5'
12490 5' -58.3 NC_003324.1 + 22260 0.68 0.424249
Target:  5'- ---uCGCGGCGAGcUGCGCcuugaugUCGUCGUu -3'
miRNA:   3'- agucGCGCCGUUC-ACGCGa------AGCGGCG- -5'
12490 5' -58.3 NC_003324.1 + 23546 0.68 0.443168
Target:  5'- aCAGCgugGCGGCGGGcGCGCU-CGgCGa -3'
miRNA:   3'- aGUCG---CGCCGUUCaCGCGAaGCgGCg -5'
12490 5' -58.3 NC_003324.1 + 42098 0.68 0.452805
Target:  5'- aUCAGCaGgGGcCGGGaGCGCUUCGCacucguCGCc -3'
miRNA:   3'- -AGUCG-CgCC-GUUCaCGCGAAGCG------GCG- -5'
12490 5' -58.3 NC_003324.1 + 32296 0.68 0.405821
Target:  5'- -uGGCGacaaCGGCcucUGCGCggCGCCGCa -3'
miRNA:   3'- agUCGC----GCCGuucACGCGaaGCGGCG- -5'
12490 5' -58.3 NC_003324.1 + 22202 0.68 0.414972
Target:  5'- aCGGUGauGUuGGUGgGCUUgcCGCCGCg -3'
miRNA:   3'- aGUCGCgcCGuUCACgCGAA--GCGGCG- -5'
12490 5' -58.3 NC_003324.1 + 48404 0.68 0.433649
Target:  5'- cUCGGCuGCGGCcuuGGaaCGCUUCaCCGCc -3'
miRNA:   3'- -AGUCG-CGCCGu--UCacGCGAAGcGGCG- -5'
12490 5' -58.3 NC_003324.1 + 14513 0.68 0.424249
Target:  5'- aCuGCGCGGCAGG-GCGU----CCGCg -3'
miRNA:   3'- aGuCGCGCCGUUCaCGCGaagcGGCG- -5'
12490 5' -58.3 NC_003324.1 + 26361 0.68 0.418668
Target:  5'- uUCAGCucgcgauaccuguuCGGCAGGUGCuGCUUCcaguGCuCGCg -3'
miRNA:   3'- -AGUCGc-------------GCCGUUCACG-CGAAG----CG-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.