miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12490 5' -58.3 NC_003324.1 + 26799 0.77 0.109831
Target:  5'- gCAGaCGCGGCc-GUGCGCUUggcuggcuuuggCGCCGCu -3'
miRNA:   3'- aGUC-GCGCCGuuCACGCGAA------------GCGGCG- -5'
12490 5' -58.3 NC_003324.1 + 19493 0.73 0.199126
Target:  5'- aUAGCGuCGGCGucGGcGUGCUUCuuGCCGCg -3'
miRNA:   3'- aGUCGC-GCCGU--UCaCGCGAAG--CGGCG- -5'
12490 5' -58.3 NC_003324.1 + 1517 0.7 0.321621
Target:  5'- cCAGCgaggauccgGCGGCAguGGUGCGCggCGCUa- -3'
miRNA:   3'- aGUCG---------CGCCGU--UCACGCGaaGCGGcg -5'
12490 5' -58.3 NC_003324.1 + 49904 0.7 0.329425
Target:  5'- gUCGGCGC-GCucGUGCucgcCUUCGCUGCc -3'
miRNA:   3'- -AGUCGCGcCGuuCACGc---GAAGCGGCG- -5'
12490 5' -58.3 NC_003324.1 + 47657 0.7 0.337367
Target:  5'- -gAGCuGUGGCAcgccGGUGCGCUggacaguuccgUCGgCGCg -3'
miRNA:   3'- agUCG-CGCCGU----UCACGCGA-----------AGCgGCG- -5'
12490 5' -58.3 NC_003324.1 + 18047 0.7 0.337367
Target:  5'- aUAG-GCGGCGAGUGCcgucaCUUCGCgGUu -3'
miRNA:   3'- aGUCgCGCCGUUCACGc----GAAGCGgCG- -5'
12490 5' -58.3 NC_003324.1 + 53884 0.69 0.387904
Target:  5'- aCAaUGgGGCcuGGUGCGCccCGCCGCa -3'
miRNA:   3'- aGUcGCgCCGu-UCACGCGaaGCGGCG- -5'
12490 5' -58.3 NC_003324.1 + 48404 0.68 0.433649
Target:  5'- cUCGGCuGCGGCcuuGGaaCGCUUCaCCGCc -3'
miRNA:   3'- -AGUCG-CGCCGu--UCacGCGAAGcGGCG- -5'
12490 5' -58.3 NC_003324.1 + 22260 0.68 0.424249
Target:  5'- ---uCGCGGCGAGcUGCGCcuugaugUCGUCGUu -3'
miRNA:   3'- agucGCGCCGUUC-ACGCGa------AGCGGCG- -5'
12490 5' -58.3 NC_003324.1 + 14513 0.68 0.424249
Target:  5'- aCuGCGCGGCAGG-GCGU----CCGCg -3'
miRNA:   3'- aGuCGCGCCGUUCaCGCGaagcGGCG- -5'
12490 5' -58.3 NC_003324.1 + 26361 0.68 0.418668
Target:  5'- uUCAGCucgcgauaccuguuCGGCAGGUGCuGCUUCcaguGCuCGCg -3'
miRNA:   3'- -AGUCGc-------------GCCGUUCACG-CGAAG----CG-GCG- -5'
12490 5' -58.3 NC_003324.1 + 22202 0.68 0.414972
Target:  5'- aCGGUGauGUuGGUGgGCUUgcCGCCGCg -3'
miRNA:   3'- aGUCGCgcCGuUCACgCGAA--GCGGCG- -5'
12490 5' -58.3 NC_003324.1 + 32296 0.68 0.405821
Target:  5'- -uGGCGacaaCGGCcucUGCGCggCGCCGCa -3'
miRNA:   3'- agUCGC----GCCGuucACGCGaaGCGGCG- -5'
12490 5' -58.3 NC_003324.1 + 30662 0.66 0.544084
Target:  5'- cUCGcuCGCGGCAAGUaucugaGCaugaUCGCCGCu -3'
miRNA:   3'- -AGUc-GCGCCGUUCAcg----CGa---AGCGGCG- -5'
12490 5' -58.3 NC_003324.1 + 25777 0.66 0.544084
Target:  5'- --uGUGgGGCAAGgaccggaauacUGCGUccaccUCGCCGCg -3'
miRNA:   3'- aguCGCgCCGUUC-----------ACGCGa----AGCGGCG- -5'
12490 5' -58.3 NC_003324.1 + 40429 0.66 0.554637
Target:  5'- gCAGCGaaagcCGGCAAGacUGCuGCagCGCCGa -3'
miRNA:   3'- aGUCGC-----GCCGUUC--ACG-CGaaGCGGCg -5'
12490 5' -58.3 NC_003324.1 + 28313 0.66 0.554637
Target:  5'- gCAGCagucgaugacGCGGCucacgAAGccGCGaCUUCGCCGUc -3'
miRNA:   3'- aGUCG----------CGCCG-----UUCa-CGC-GAAGCGGCG- -5'
12490 5' -58.3 NC_003324.1 + 18908 0.66 0.554637
Target:  5'- cCGGCGUGaugGAGacugGCGCcgaccUUCGCCGCg -3'
miRNA:   3'- aGUCGCGCcg-UUCa---CGCG-----AAGCGGCG- -5'
12490 5' -58.3 NC_003324.1 + 23232 0.66 0.56525
Target:  5'- -gGGCGcCGGCAAGa-CGUUU-GCCGCc -3'
miRNA:   3'- agUCGC-GCCGUUCacGCGAAgCGGCG- -5'
12490 5' -58.3 NC_003324.1 + 5496 0.75 0.165377
Target:  5'- cUCGGCGCcGCAGGUGCGggcgccauCUuccgagccgaaaUCGCCGCu -3'
miRNA:   3'- -AGUCGCGcCGUUCACGC--------GA------------AGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.