miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12490 5' -58.3 NC_003324.1 + 23546 0.68 0.443168
Target:  5'- aCAGCgugGCGGCGGGcGCGCU-CGgCGa -3'
miRNA:   3'- aGUCG---CGCCGUUCaCGCGAaGCgGCg -5'
12490 5' -58.3 NC_003324.1 + 25777 0.66 0.544084
Target:  5'- --uGUGgGGCAAGgaccggaauacUGCGUccaccUCGCCGCg -3'
miRNA:   3'- aguCGCgCCGUUC-----------ACGCGa----AGCGGCG- -5'
12490 5' -58.3 NC_003324.1 + 26361 0.68 0.418668
Target:  5'- uUCAGCucgcgauaccuguuCGGCAGGUGCuGCUUCcaguGCuCGCg -3'
miRNA:   3'- -AGUCGc-------------GCCGUUCACG-CGAAG----CG-GCG- -5'
12490 5' -58.3 NC_003324.1 + 26799 0.77 0.109831
Target:  5'- gCAGaCGCGGCc-GUGCGCUUggcuggcuuuggCGCCGCu -3'
miRNA:   3'- aGUC-GCGCCGuuCACGCGAA------------GCGGCG- -5'
12490 5' -58.3 NC_003324.1 + 27559 0.67 0.462554
Target:  5'- aCGGCacuuCGGCGgagaAGUuCGCaUCGCCGCa -3'
miRNA:   3'- aGUCGc---GCCGU----UCAcGCGaAGCGGCG- -5'
12490 5' -58.3 NC_003324.1 + 28313 0.66 0.554637
Target:  5'- gCAGCagucgaugacGCGGCucacgAAGccGCGaCUUCGCCGUc -3'
miRNA:   3'- aGUCG----------CGCCG-----UUCa-CGC-GAAGCGGCG- -5'
12490 5' -58.3 NC_003324.1 + 30662 0.66 0.544084
Target:  5'- cUCGcuCGCGGCAAGUaucugaGCaugaUCGCCGCu -3'
miRNA:   3'- -AGUc-GCGCCGUUCAcg----CGa---AGCGGCG- -5'
12490 5' -58.3 NC_003324.1 + 31036 0.66 0.554637
Target:  5'- cCGGCGCGGUcGGcGUucaacuccuGCUgacgCGCUGCg -3'
miRNA:   3'- aGUCGCGCCGuUCaCG---------CGAa---GCGGCG- -5'
12490 5' -58.3 NC_003324.1 + 31093 0.66 0.554637
Target:  5'- cCGGUccuuGCGGCAA-UGCGCU--GCUGCu -3'
miRNA:   3'- aGUCG----CGCCGUUcACGCGAagCGGCG- -5'
12490 5' -58.3 NC_003324.1 + 31184 0.68 0.443168
Target:  5'- gCAGC-CGaGCAGcaGCGCaUUGCCGCa -3'
miRNA:   3'- aGUCGcGC-CGUUcaCGCGaAGCGGCG- -5'
12490 5' -58.3 NC_003324.1 + 31321 0.74 0.193961
Target:  5'- gCAGUGCGGCcGGcgGCGCUggCGCUGg -3'
miRNA:   3'- aGUCGCGCCGuUCa-CGCGAa-GCGGCg -5'
12490 5' -58.3 NC_003324.1 + 32296 0.68 0.405821
Target:  5'- -uGGCGacaaCGGCcucUGCGCggCGCCGCa -3'
miRNA:   3'- agUCGC----GCCGuucACGCGaaGCGGCG- -5'
12490 5' -58.3 NC_003324.1 + 32486 0.67 0.482376
Target:  5'- gUguGCGCGGUAAGaGCGC---GCCGa -3'
miRNA:   3'- -AguCGCGCCGUUCaCGCGaagCGGCg -5'
12490 5' -58.3 NC_003324.1 + 34456 0.66 0.544084
Target:  5'- -aAGCGuCGGCGGGauuucGCGCUucugCGUCGUc -3'
miRNA:   3'- agUCGC-GCCGUUCa----CGCGAa---GCGGCG- -5'
12490 5' -58.3 NC_003324.1 + 34906 0.67 0.469444
Target:  5'- gUCGGC-CGGCAGGauccacguugccgGCGCUccugcucuucaucugCGCCGCc -3'
miRNA:   3'- -AGUCGcGCCGUUCa------------CGCGAa--------------GCGGCG- -5'
12490 5' -58.3 NC_003324.1 + 35463 0.67 0.512849
Target:  5'- gUCGGCGauguCGGCGAGcguggggacgGCGa-UCGCCGUa -3'
miRNA:   3'- -AGUCGC----GCCGUUCa---------CGCgaAGCGGCG- -5'
12490 5' -58.3 NC_003324.1 + 36119 0.68 0.414972
Target:  5'- --uGCGCaGCAAGUGCGCggCGaaaagacccUCGCg -3'
miRNA:   3'- aguCGCGcCGUUCACGCGaaGC---------GGCG- -5'
12490 5' -58.3 NC_003324.1 + 37513 0.69 0.379143
Target:  5'- cUguGCGCGGCAA-UGCGC-UCGauaGCa -3'
miRNA:   3'- -AguCGCGCCGUUcACGCGaAGCgg-CG- -5'
12490 5' -58.3 NC_003324.1 + 37573 0.67 0.482376
Target:  5'- gUAGCGUGcGCAAGaaGCGCUaccagUCGCC-Ca -3'
miRNA:   3'- aGUCGCGC-CGUUCa-CGCGA-----AGCGGcG- -5'
12490 5' -58.3 NC_003324.1 + 38171 0.7 0.321621
Target:  5'- cCAGCaCGGCGccgacGCGCUUCGCCa- -3'
miRNA:   3'- aGUCGcGCCGUuca--CGCGAAGCGGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.