Results 21 - 40 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12490 | 5' | -58.3 | NC_003324.1 | + | 42279 | 0.66 | 0.544084 |
Target: 5'- -gGGCGCGGgucggcaacgcUGAGUGCGC--CGCCuGCc -3' miRNA: 3'- agUCGCGCC-----------GUUCACGCGaaGCGG-CG- -5' |
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12490 | 5' | -58.3 | NC_003324.1 | + | 42098 | 0.68 | 0.452805 |
Target: 5'- aUCAGCaGgGGcCGGGaGCGCUUCGCacucguCGCc -3' miRNA: 3'- -AGUCG-CgCC-GUUCaCGCGAAGCG------GCG- -5' |
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12490 | 5' | -58.3 | NC_003324.1 | + | 41992 | 0.68 | 0.443168 |
Target: 5'- cCGGaUGCGGCGAcUGCGa-UCGCCGa -3' miRNA: 3'- aGUC-GCGCCGUUcACGCgaAGCGGCg -5' |
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12490 | 5' | -58.3 | NC_003324.1 | + | 41767 | 0.7 | 0.340583 |
Target: 5'- aUUGGCGCaucgcuaccguuGGCAcAGUGCGCgucggcuacgucgCGCCGCc -3' miRNA: 3'- -AGUCGCG------------CCGU-UCACGCGaa-----------GCGGCG- -5' |
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12490 | 5' | -58.3 | NC_003324.1 | + | 40429 | 0.66 | 0.554637 |
Target: 5'- gCAGCGaaagcCGGCAAGacUGCuGCagCGCCGa -3' miRNA: 3'- aGUCGC-----GCCGUUC--ACG-CGaaGCGGCg -5' |
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12490 | 5' | -58.3 | NC_003324.1 | + | 39461 | 0.67 | 0.502599 |
Target: 5'- -gAGcCGCaGGCAAGc-UGCUUCGCCGg -3' miRNA: 3'- agUC-GCG-CCGUUCacGCGAAGCGGCg -5' |
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12490 | 5' | -58.3 | NC_003324.1 | + | 38333 | 0.66 | 0.523184 |
Target: 5'- -gGGCGUcucgaucacgagGGCAccGGggcgGCGCUggUCGCCGUc -3' miRNA: 3'- agUCGCG------------CCGU--UCa---CGCGA--AGCGGCG- -5' |
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12490 | 5' | -58.3 | NC_003324.1 | + | 38171 | 0.7 | 0.321621 |
Target: 5'- cCAGCaCGGCGccgacGCGCUUCGCCa- -3' miRNA: 3'- aGUCGcGCCGUuca--CGCGAAGCGGcg -5' |
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12490 | 5' | -58.3 | NC_003324.1 | + | 37573 | 0.67 | 0.482376 |
Target: 5'- gUAGCGUGcGCAAGaaGCGCUaccagUCGCC-Ca -3' miRNA: 3'- aGUCGCGC-CGUUCa-CGCGA-----AGCGGcG- -5' |
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12490 | 5' | -58.3 | NC_003324.1 | + | 37513 | 0.69 | 0.379143 |
Target: 5'- cUguGCGCGGCAA-UGCGC-UCGauaGCa -3' miRNA: 3'- -AguCGCGCCGUUcACGCGaAGCgg-CG- -5' |
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12490 | 5' | -58.3 | NC_003324.1 | + | 36119 | 0.68 | 0.414972 |
Target: 5'- --uGCGCaGCAAGUGCGCggCGaaaagacccUCGCg -3' miRNA: 3'- aguCGCGcCGUUCACGCGaaGC---------GGCG- -5' |
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12490 | 5' | -58.3 | NC_003324.1 | + | 35463 | 0.67 | 0.512849 |
Target: 5'- gUCGGCGauguCGGCGAGcguggggacgGCGa-UCGCCGUa -3' miRNA: 3'- -AGUCGC----GCCGUUCa---------CGCgaAGCGGCG- -5' |
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12490 | 5' | -58.3 | NC_003324.1 | + | 34906 | 0.67 | 0.469444 |
Target: 5'- gUCGGC-CGGCAGGauccacguugccgGCGCUccugcucuucaucugCGCCGCc -3' miRNA: 3'- -AGUCGcGCCGUUCa------------CGCGAa--------------GCGGCG- -5' |
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12490 | 5' | -58.3 | NC_003324.1 | + | 34456 | 0.66 | 0.544084 |
Target: 5'- -aAGCGuCGGCGGGauuucGCGCUucugCGUCGUc -3' miRNA: 3'- agUCGC-GCCGUUCa----CGCGAa---GCGGCG- -5' |
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12490 | 5' | -58.3 | NC_003324.1 | + | 32486 | 0.67 | 0.482376 |
Target: 5'- gUguGCGCGGUAAGaGCGC---GCCGa -3' miRNA: 3'- -AguCGCGCCGUUCaCGCGaagCGGCg -5' |
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12490 | 5' | -58.3 | NC_003324.1 | + | 32296 | 0.68 | 0.405821 |
Target: 5'- -uGGCGacaaCGGCcucUGCGCggCGCCGCa -3' miRNA: 3'- agUCGC----GCCGuucACGCGaaGCGGCG- -5' |
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12490 | 5' | -58.3 | NC_003324.1 | + | 31321 | 0.74 | 0.193961 |
Target: 5'- gCAGUGCGGCcGGcgGCGCUggCGCUGg -3' miRNA: 3'- aGUCGCGCCGuUCa-CGCGAa-GCGGCg -5' |
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12490 | 5' | -58.3 | NC_003324.1 | + | 31184 | 0.68 | 0.443168 |
Target: 5'- gCAGC-CGaGCAGcaGCGCaUUGCCGCa -3' miRNA: 3'- aGUCGcGC-CGUUcaCGCGaAGCGGCG- -5' |
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12490 | 5' | -58.3 | NC_003324.1 | + | 31093 | 0.66 | 0.554637 |
Target: 5'- cCGGUccuuGCGGCAA-UGCGCU--GCUGCu -3' miRNA: 3'- aGUCG----CGCCGUUcACGCGAagCGGCG- -5' |
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12490 | 5' | -58.3 | NC_003324.1 | + | 31036 | 0.66 | 0.554637 |
Target: 5'- cCGGCGCGGUcGGcGUucaacuccuGCUgacgCGCUGCg -3' miRNA: 3'- aGUCGCGCCGuUCaCG---------CGAa---GCGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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