miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12490 5' -58.3 NC_003324.1 + 57031 0.67 0.502599
Target:  5'- -gAGCgGCGGCGAGgGCGCggaUGCCu- -3'
miRNA:   3'- agUCG-CGCCGUUCaCGCGaa-GCGGcg -5'
12490 5' -58.3 NC_003324.1 + 56638 0.67 0.462554
Target:  5'- -gGGCgGCGGCAugGGUcGCGggcaaCUUCGcCCGCa -3'
miRNA:   3'- agUCG-CGCCGU--UCA-CGC-----GAAGC-GGCG- -5'
12490 5' -58.3 NC_003324.1 + 56089 0.73 0.204411
Target:  5'- aCGGCGCGcuccgcccuGUggGUGCGCUucucgacgaUCGCgCGCa -3'
miRNA:   3'- aGUCGCGC---------CGuuCACGCGA---------AGCG-GCG- -5'
12490 5' -58.3 NC_003324.1 + 54538 0.69 0.396798
Target:  5'- -gGGCG-GGCAAGcuuucCGCUcUCGCCGCc -3'
miRNA:   3'- agUCGCgCCGUUCac---GCGA-AGCGGCG- -5'
12490 5' -58.3 NC_003324.1 + 54004 0.69 0.379143
Target:  5'- gCAG-GCGGCGAa-GCGCacUUGCCGCg -3'
miRNA:   3'- aGUCgCGCCGUUcaCGCGa-AGCGGCG- -5'
12490 5' -58.3 NC_003324.1 + 53917 1.11 0.000367
Target:  5'- aUCAGCGCGGCAAGUGCGCUUCGCCGCc -3'
miRNA:   3'- -AGUCGCGCCGUUCACGCGAAGCGGCG- -5'
12490 5' -58.3 NC_003324.1 + 53884 0.69 0.387904
Target:  5'- aCAaUGgGGCcuGGUGCGCccCGCCGCa -3'
miRNA:   3'- aGUcGCgCCGu-UCACGCGaaGCGGCG- -5'
12490 5' -58.3 NC_003324.1 + 53061 0.71 0.306431
Target:  5'- uUCAuugGCGGCAGGUcGCGCUcgucUCGgCGCg -3'
miRNA:   3'- -AGUcg-CGCCGUUCA-CGCGA----AGCgGCG- -5'
12490 5' -58.3 NC_003324.1 + 51415 0.77 0.106828
Target:  5'- aUCAGcCGCGGCGaccggauuugGGUGCGCgagaaCGCUGCu -3'
miRNA:   3'- -AGUC-GCGCCGU----------UCACGCGaa---GCGGCG- -5'
12490 5' -58.3 NC_003324.1 + 50869 0.66 0.544084
Target:  5'- cCGGUGUGGCAGcauUGC-CgUCGCCGUc -3'
miRNA:   3'- aGUCGCGCCGUUc--ACGcGaAGCGGCG- -5'
12490 5' -58.3 NC_003324.1 + 50622 0.66 0.544084
Target:  5'- cUCGGCGuCGaGCAGGUcaacgcggGUGCUg-GCUGCg -3'
miRNA:   3'- -AGUCGC-GC-CGUUCA--------CGCGAagCGGCG- -5'
12490 5' -58.3 NC_003324.1 + 49904 0.7 0.329425
Target:  5'- gUCGGCGC-GCucGUGCucgcCUUCGCUGCc -3'
miRNA:   3'- -AGUCGCGcCGuuCACGc---GAAGCGGCG- -5'
12490 5' -58.3 NC_003324.1 + 49417 0.67 0.462554
Target:  5'- aUCGGCGagccCGGCAGcgGCGCUUgGCUGa -3'
miRNA:   3'- -AGUCGC----GCCGUUcaCGCGAAgCGGCg -5'
12490 5' -58.3 NC_003324.1 + 48513 0.69 0.351187
Target:  5'- cUCGGCGCGGCGcucuucgaugaggcGGUgaaGCGUUccaagGCCGCa -3'
miRNA:   3'- -AGUCGCGCCGU--------------UCA---CGCGAag---CGGCG- -5'
12490 5' -58.3 NC_003324.1 + 48404 0.68 0.433649
Target:  5'- cUCGGCuGCGGCcuuGGaaCGCUUCaCCGCc -3'
miRNA:   3'- -AGUCG-CGCCGu--UCacGCGAAGcGGCG- -5'
12490 5' -58.3 NC_003324.1 + 47657 0.7 0.337367
Target:  5'- -gAGCuGUGGCAcgccGGUGCGCUggacaguuccgUCGgCGCg -3'
miRNA:   3'- agUCG-CGCCGU----UCACGCGA-----------AGCgGCG- -5'
12490 5' -58.3 NC_003324.1 + 46319 0.67 0.502599
Target:  5'- aCAGCucGCGaGCGcGGUGgGCUcUGCCGUg -3'
miRNA:   3'- aGUCG--CGC-CGU-UCACgCGAaGCGGCG- -5'
12490 5' -58.3 NC_003324.1 + 42633 0.69 0.391446
Target:  5'- gUCAuUGCGGCAagcacgacuggcaauGGUGC-CUUUGCCGUu -3'
miRNA:   3'- -AGUcGCGCCGU---------------UCACGcGAAGCGGCG- -5'
12490 5' -58.3 NC_003324.1 + 42530 0.67 0.499542
Target:  5'- gUCAGCaaCGGCAaaggcaccauugccAGUcGUGCUU-GCCGCa -3'
miRNA:   3'- -AGUCGc-GCCGU--------------UCA-CGCGAAgCGGCG- -5'
12490 5' -58.3 NC_003324.1 + 42380 0.66 0.575914
Target:  5'- cCGGCacGUGGCAGGcgGCGCacucagcgUUGCCGa -3'
miRNA:   3'- aGUCG--CGCCGUUCa-CGCGa-------AGCGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.