miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12490 5' -58.3 NC_003324.1 + 53917 1.11 0.000367
Target:  5'- aUCAGCGCGGCAAGUGCGCUUCGCCGCc -3'
miRNA:   3'- -AGUCGCGCCGUUCACGCGAAGCGGCG- -5'
12490 5' -58.3 NC_003324.1 + 51415 0.77 0.106828
Target:  5'- aUCAGcCGCGGCGaccggauuugGGUGCGCgagaaCGCUGCu -3'
miRNA:   3'- -AGUC-GCGCCGU----------UCACGCGaa---GCGGCG- -5'
12490 5' -58.3 NC_003324.1 + 26799 0.77 0.109831
Target:  5'- gCAGaCGCGGCc-GUGCGCUUggcuggcuuuggCGCCGCu -3'
miRNA:   3'- aGUC-GCGCCGuuCACGCGAA------------GCGGCG- -5'
12490 5' -58.3 NC_003324.1 + 5496 0.75 0.165377
Target:  5'- cUCGGCGCcGCAGGUGCGggcgccauCUuccgagccgaaaUCGCCGCu -3'
miRNA:   3'- -AGUCGCGcCGUUCACGC--------GA------------AGCGGCG- -5'
12490 5' -58.3 NC_003324.1 + 31321 0.74 0.193961
Target:  5'- gCAGUGCGGCcGGcgGCGCUggCGCUGg -3'
miRNA:   3'- aGUCGCGCCGuUCa-CGCGAa-GCGGCg -5'
12490 5' -58.3 NC_003324.1 + 19493 0.73 0.199126
Target:  5'- aUAGCGuCGGCGucGGcGUGCUUCuuGCCGCg -3'
miRNA:   3'- aGUCGC-GCCGU--UCaCGCGAAG--CGGCG- -5'
12490 5' -58.3 NC_003324.1 + 56089 0.73 0.204411
Target:  5'- aCGGCGCGcuccgcccuGUggGUGCGCUucucgacgaUCGCgCGCa -3'
miRNA:   3'- aGUCGCGC---------CGuuCACGCGA---------AGCG-GCG- -5'
12490 5' -58.3 NC_003324.1 + 4730 0.72 0.238721
Target:  5'- uUCAuGaCGCaGacguAGUGCGCUUCGCCGUu -3'
miRNA:   3'- -AGU-C-GCGcCgu--UCACGCGAAGCGGCG- -5'
12490 5' -58.3 NC_003324.1 + 53061 0.71 0.306431
Target:  5'- uUCAuugGCGGCAGGUcGCGCUcgucUCGgCGCg -3'
miRNA:   3'- -AGUcg-CGCCGUUCA-CGCGA----AGCgGCG- -5'
12490 5' -58.3 NC_003324.1 + 38171 0.7 0.321621
Target:  5'- cCAGCaCGGCGccgacGCGCUUCGCCa- -3'
miRNA:   3'- aGUCGcGCCGUuca--CGCGAAGCGGcg -5'
12490 5' -58.3 NC_003324.1 + 1517 0.7 0.321621
Target:  5'- cCAGCgaggauccgGCGGCAguGGUGCGCggCGCUa- -3'
miRNA:   3'- aGUCG---------CGCCGU--UCACGCGaaGCGGcg -5'
12490 5' -58.3 NC_003324.1 + 49904 0.7 0.329425
Target:  5'- gUCGGCGC-GCucGUGCucgcCUUCGCUGCc -3'
miRNA:   3'- -AGUCGCGcCGuuCACGc---GAAGCGGCG- -5'
12490 5' -58.3 NC_003324.1 + 18047 0.7 0.337367
Target:  5'- aUAG-GCGGCGAGUGCcgucaCUUCGCgGUu -3'
miRNA:   3'- aGUCgCGCCGUUCACGc----GAAGCGgCG- -5'
12490 5' -58.3 NC_003324.1 + 47657 0.7 0.337367
Target:  5'- -gAGCuGUGGCAcgccGGUGCGCUggacaguuccgUCGgCGCg -3'
miRNA:   3'- agUCG-CGCCGU----UCACGCGA-----------AGCgGCG- -5'
12490 5' -58.3 NC_003324.1 + 41767 0.7 0.340583
Target:  5'- aUUGGCGCaucgcuaccguuGGCAcAGUGCGCgucggcuacgucgCGCCGCc -3'
miRNA:   3'- -AGUCGCG------------CCGU-UCACGCGaa-----------GCGGCG- -5'
12490 5' -58.3 NC_003324.1 + 3246 0.7 0.344634
Target:  5'- aUCGGCGCGGUGccGGUGCuuucggaGC-UCGCCa- -3'
miRNA:   3'- -AGUCGCGCCGU--UCACG-------CGaAGCGGcg -5'
12490 5' -58.3 NC_003324.1 + 48513 0.69 0.351187
Target:  5'- cUCGGCGCGGCGcucuucgaugaggcGGUgaaGCGUUccaagGCCGCa -3'
miRNA:   3'- -AGUCGCGCCGU--------------UCA---CGCGAag---CGGCG- -5'
12490 5' -58.3 NC_003324.1 + 37513 0.69 0.379143
Target:  5'- cUguGCGCGGCAA-UGCGC-UCGauaGCa -3'
miRNA:   3'- -AguCGCGCCGUUcACGCGaAGCgg-CG- -5'
12490 5' -58.3 NC_003324.1 + 54004 0.69 0.379143
Target:  5'- gCAG-GCGGCGAa-GCGCacUUGCCGCg -3'
miRNA:   3'- aGUCgCGCCGUUcaCGCGa-AGCGGCG- -5'
12490 5' -58.3 NC_003324.1 + 53884 0.69 0.387904
Target:  5'- aCAaUGgGGCcuGGUGCGCccCGCCGCa -3'
miRNA:   3'- aGUcGCgCCGu-UCACGCGaaGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.