miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12490 5' -58.3 NC_003324.1 + 1517 0.7 0.321621
Target:  5'- cCAGCgaggauccgGCGGCAguGGUGCGCggCGCUa- -3'
miRNA:   3'- aGUCG---------CGCCGU--UCACGCGaaGCGGcg -5'
12490 5' -58.3 NC_003324.1 + 2367 0.67 0.512849
Target:  5'- gCAGCccgcccgcaGgGGCGGGU-CGCggUCGCUGCg -3'
miRNA:   3'- aGUCG---------CgCCGUUCAcGCGa-AGCGGCG- -5'
12490 5' -58.3 NC_003324.1 + 3246 0.7 0.344634
Target:  5'- aUCGGCGCGGUGccGGUGCuuucggaGC-UCGCCa- -3'
miRNA:   3'- -AGUCGCGCCGU--UCACG-------CGaAGCGGcg -5'
12490 5' -58.3 NC_003324.1 + 4730 0.72 0.238721
Target:  5'- uUCAuGaCGCaGacguAGUGCGCUUCGCCGUu -3'
miRNA:   3'- -AGU-C-GCGcCgu--UCACGCGAAGCGGCG- -5'
12490 5' -58.3 NC_003324.1 + 5496 0.75 0.165377
Target:  5'- cUCGGCGCcGCAGGUGCGggcgccauCUuccgagccgaaaUCGCCGCu -3'
miRNA:   3'- -AGUCGCGcCGUUCACGC--------GA------------AGCGGCG- -5'
12490 5' -58.3 NC_003324.1 + 5981 0.66 0.56206
Target:  5'- gCAGCGCGaGCAcGGUGgaggagaucgaagcCGCaaUUGCCGCc -3'
miRNA:   3'- aGUCGCGC-CGU-UCAC--------------GCGa-AGCGGCG- -5'
12490 5' -58.3 NC_003324.1 + 7660 0.66 0.56525
Target:  5'- gCAGUGcCGGCug--GCGUUuaugugUCGCUGCa -3'
miRNA:   3'- aGUCGC-GCCGuucaCGCGA------AGCGGCG- -5'
12490 5' -58.3 NC_003324.1 + 7776 0.67 0.482376
Target:  5'- -aGGCGCGaucGCAAc-GgGCUUUGCCGCc -3'
miRNA:   3'- agUCGCGC---CGUUcaCgCGAAGCGGCG- -5'
12490 5' -58.3 NC_003324.1 + 12139 0.68 0.405821
Target:  5'- uUUGGCuGCGGUAuaUGCGCUgCGUCGUg -3'
miRNA:   3'- -AGUCG-CGCCGUucACGCGAaGCGGCG- -5'
12490 5' -58.3 NC_003324.1 + 14513 0.68 0.424249
Target:  5'- aCuGCGCGGCAGG-GCGU----CCGCg -3'
miRNA:   3'- aGuCGCGCCGUUCaCGCGaagcGGCG- -5'
12490 5' -58.3 NC_003324.1 + 16113 0.66 0.523184
Target:  5'- gCAGCGaggugguccUGcGCAGG-GCGCUUCgguagcggggGCCGCg -3'
miRNA:   3'- aGUCGC---------GC-CGUUCaCGCGAAG----------CGGCG- -5'
12490 5' -58.3 NC_003324.1 + 18047 0.7 0.337367
Target:  5'- aUAG-GCGGCGAGUGCcgucaCUUCGCgGUu -3'
miRNA:   3'- aGUCgCGCCGUUCACGc----GAAGCGgCG- -5'
12490 5' -58.3 NC_003324.1 + 18908 0.66 0.554637
Target:  5'- cCGGCGUGaugGAGacugGCGCcgaccUUCGCCGCg -3'
miRNA:   3'- aGUCGCGCcg-UUCa---CGCG-----AAGCGGCG- -5'
12490 5' -58.3 NC_003324.1 + 19493 0.73 0.199126
Target:  5'- aUAGCGuCGGCGucGGcGUGCUUCuuGCCGCg -3'
miRNA:   3'- aGUCGC-GCCGU--UCaCGCGAAG--CGGCG- -5'
12490 5' -58.3 NC_003324.1 + 19623 0.66 0.523184
Target:  5'- gCAGCGCGggcuGCAGGUcaGUcagUUUGCCGCg -3'
miRNA:   3'- aGUCGCGC----CGUUCAcgCG---AAGCGGCG- -5'
12490 5' -58.3 NC_003324.1 + 20796 0.66 0.523184
Target:  5'- gUUGGCgagGCGGCGgaccguguuGGUGaCGCgcaUCGCCGUu -3'
miRNA:   3'- -AGUCG---CGCCGU---------UCAC-GCGa--AGCGGCG- -5'
12490 5' -58.3 NC_003324.1 + 22108 0.68 0.424249
Target:  5'- gUCGGaCGCGcGCAAGgcUGCGCUcgacaugcgccUCGUCGa -3'
miRNA:   3'- -AGUC-GCGC-CGUUC--ACGCGA-----------AGCGGCg -5'
12490 5' -58.3 NC_003324.1 + 22202 0.68 0.414972
Target:  5'- aCGGUGauGUuGGUGgGCUUgcCGCCGCg -3'
miRNA:   3'- aGUCGCgcCGuUCACgCGAA--GCGGCG- -5'
12490 5' -58.3 NC_003324.1 + 22260 0.68 0.424249
Target:  5'- ---uCGCGGCGAGcUGCGCcuugaugUCGUCGUu -3'
miRNA:   3'- agucGCGCCGUUC-ACGCGa------AGCGGCG- -5'
12490 5' -58.3 NC_003324.1 + 23232 0.66 0.56525
Target:  5'- -gGGCGcCGGCAAGa-CGUUU-GCCGCc -3'
miRNA:   3'- agUCGC-GCCGUUCacGCGAAgCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.