miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12490 5' -58.3 NC_003324.1 + 42380 0.66 0.575914
Target:  5'- cCGGCacGUGGCAGGcgGCGCacucagcgUUGCCGa -3'
miRNA:   3'- aGUCG--CGCCGUUCa-CGCGa-------AGCGGCg -5'
12490 5' -58.3 NC_003324.1 + 23232 0.66 0.56525
Target:  5'- -gGGCGcCGGCAAGa-CGUUU-GCCGCc -3'
miRNA:   3'- agUCGC-GCCGUUCacGCGAAgCGGCG- -5'
12490 5' -58.3 NC_003324.1 + 7660 0.66 0.56525
Target:  5'- gCAGUGcCGGCug--GCGUUuaugugUCGCUGCa -3'
miRNA:   3'- aGUCGC-GCCGuucaCGCGA------AGCGGCG- -5'
12490 5' -58.3 NC_003324.1 + 5981 0.66 0.56206
Target:  5'- gCAGCGCGaGCAcGGUGgaggagaucgaagcCGCaaUUGCCGCc -3'
miRNA:   3'- aGUCGCGC-CGU-UCAC--------------GCGa-AGCGGCG- -5'
12490 5' -58.3 NC_003324.1 + 40429 0.66 0.554637
Target:  5'- gCAGCGaaagcCGGCAAGacUGCuGCagCGCCGa -3'
miRNA:   3'- aGUCGC-----GCCGUUC--ACG-CGaaGCGGCg -5'
12490 5' -58.3 NC_003324.1 + 28313 0.66 0.554637
Target:  5'- gCAGCagucgaugacGCGGCucacgAAGccGCGaCUUCGCCGUc -3'
miRNA:   3'- aGUCG----------CGCCG-----UUCa-CGC-GAAGCGGCG- -5'
12490 5' -58.3 NC_003324.1 + 18908 0.66 0.554637
Target:  5'- cCGGCGUGaugGAGacugGCGCcgaccUUCGCCGCg -3'
miRNA:   3'- aGUCGCGCcg-UUCa---CGCG-----AAGCGGCG- -5'
12490 5' -58.3 NC_003324.1 + 31036 0.66 0.554637
Target:  5'- cCGGCGCGGUcGGcGUucaacuccuGCUgacgCGCUGCg -3'
miRNA:   3'- aGUCGCGCCGuUCaCG---------CGAa---GCGGCG- -5'
12490 5' -58.3 NC_003324.1 + 31093 0.66 0.554637
Target:  5'- cCGGUccuuGCGGCAA-UGCGCU--GCUGCu -3'
miRNA:   3'- aGUCG----CGCCGUUcACGCGAagCGGCG- -5'
12490 5' -58.3 NC_003324.1 + 50869 0.66 0.544084
Target:  5'- cCGGUGUGGCAGcauUGC-CgUCGCCGUc -3'
miRNA:   3'- aGUCGCGCCGUUc--ACGcGaAGCGGCG- -5'
12490 5' -58.3 NC_003324.1 + 50622 0.66 0.544084
Target:  5'- cUCGGCGuCGaGCAGGUcaacgcggGUGCUg-GCUGCg -3'
miRNA:   3'- -AGUCGC-GC-CGUUCA--------CGCGAagCGGCG- -5'
12490 5' -58.3 NC_003324.1 + 30662 0.66 0.544084
Target:  5'- cUCGcuCGCGGCAAGUaucugaGCaugaUCGCCGCu -3'
miRNA:   3'- -AGUc-GCGCCGUUCAcg----CGa---AGCGGCG- -5'
12490 5' -58.3 NC_003324.1 + 25777 0.66 0.544084
Target:  5'- --uGUGgGGCAAGgaccggaauacUGCGUccaccUCGCCGCg -3'
miRNA:   3'- aguCGCgCCGUUC-----------ACGCGa----AGCGGCG- -5'
12490 5' -58.3 NC_003324.1 + 42279 0.66 0.544084
Target:  5'- -gGGCGCGGgucggcaacgcUGAGUGCGC--CGCCuGCc -3'
miRNA:   3'- agUCGCGCC-----------GUUCACGCGaaGCGG-CG- -5'
12490 5' -58.3 NC_003324.1 + 34456 0.66 0.544084
Target:  5'- -aAGCGuCGGCGGGauuucGCGCUucugCGUCGUc -3'
miRNA:   3'- agUCGC-GCCGUUCa----CGCGAa---GCGGCG- -5'
12490 5' -58.3 NC_003324.1 + 38333 0.66 0.523184
Target:  5'- -gGGCGUcucgaucacgagGGCAccGGggcgGCGCUggUCGCCGUc -3'
miRNA:   3'- agUCGCG------------CCGU--UCa---CGCGA--AGCGGCG- -5'
12490 5' -58.3 NC_003324.1 + 20796 0.66 0.523184
Target:  5'- gUUGGCgagGCGGCGgaccguguuGGUGaCGCgcaUCGCCGUu -3'
miRNA:   3'- -AGUCG---CGCCGU---------UCAC-GCGa--AGCGGCG- -5'
12490 5' -58.3 NC_003324.1 + 19623 0.66 0.523184
Target:  5'- gCAGCGCGggcuGCAGGUcaGUcagUUUGCCGCg -3'
miRNA:   3'- aGUCGCGC----CGUUCAcgCG---AAGCGGCG- -5'
12490 5' -58.3 NC_003324.1 + 16113 0.66 0.523184
Target:  5'- gCAGCGaggugguccUGcGCAGG-GCGCUUCgguagcggggGCCGCg -3'
miRNA:   3'- aGUCGC---------GC-CGUUCaCGCGAAG----------CGGCG- -5'
12490 5' -58.3 NC_003324.1 + 35463 0.67 0.512849
Target:  5'- gUCGGCGauguCGGCGAGcguggggacgGCGa-UCGCCGUa -3'
miRNA:   3'- -AGUCGC----GCCGUUCa---------CGCgaAGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.