miRNA display CGI


Results 21 - 40 of 67 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12490 5' -58.3 NC_003324.1 + 41992 0.68 0.443168
Target:  5'- cCGGaUGCGGCGAcUGCGa-UCGCCGa -3'
miRNA:   3'- aGUC-GCGCCGUUcACGCgaAGCGGCg -5'
12490 5' -58.3 NC_003324.1 + 57031 0.67 0.502599
Target:  5'- -gAGCgGCGGCGAGgGCGCggaUGCCu- -3'
miRNA:   3'- agUCG-CGCCGUUCaCGCGaa-GCGGcg -5'
12490 5' -58.3 NC_003324.1 + 41767 0.7 0.340583
Target:  5'- aUUGGCGCaucgcuaccguuGGCAcAGUGCGCgucggcuacgucgCGCCGCc -3'
miRNA:   3'- -AGUCGCG------------CCGU-UCACGCGaa-----------GCGGCG- -5'
12490 5' -58.3 NC_003324.1 + 36119 0.68 0.414972
Target:  5'- --uGCGCaGCAAGUGCGCggCGaaaagacccUCGCg -3'
miRNA:   3'- aguCGCGcCGUUCACGCGaaGC---------GGCG- -5'
12490 5' -58.3 NC_003324.1 + 39461 0.67 0.502599
Target:  5'- -gAGcCGCaGGCAAGc-UGCUUCGCCGg -3'
miRNA:   3'- agUC-GCG-CCGUUCacGCGAAGCGGCg -5'
12490 5' -58.3 NC_003324.1 + 3246 0.7 0.344634
Target:  5'- aUCGGCGCGGUGccGGUGCuuucggaGC-UCGCCa- -3'
miRNA:   3'- -AGUCGCGCCGU--UCACG-------CGaAGCGGcg -5'
12490 5' -58.3 NC_003324.1 + 2367 0.67 0.512849
Target:  5'- gCAGCccgcccgcaGgGGCGGGU-CGCggUCGCUGCg -3'
miRNA:   3'- aGUCG---------CgCCGUUCAcGCGa-AGCGGCG- -5'
12490 5' -58.3 NC_003324.1 + 50869 0.66 0.544084
Target:  5'- cCGGUGUGGCAGcauUGC-CgUCGCCGUc -3'
miRNA:   3'- aGUCGCGCCGUUc--ACGcGaAGCGGCG- -5'
12490 5' -58.3 NC_003324.1 + 12139 0.68 0.405821
Target:  5'- uUUGGCuGCGGUAuaUGCGCUgCGUCGUg -3'
miRNA:   3'- -AGUCG-CGCCGUucACGCGAaGCGGCG- -5'
12490 5' -58.3 NC_003324.1 + 56089 0.73 0.204411
Target:  5'- aCGGCGCGcuccgcccuGUggGUGCGCUucucgacgaUCGCgCGCa -3'
miRNA:   3'- aGUCGCGC---------CGuuCACGCGA---------AGCG-GCG- -5'
12490 5' -58.3 NC_003324.1 + 56638 0.67 0.462554
Target:  5'- -gGGCgGCGGCAugGGUcGCGggcaaCUUCGcCCGCa -3'
miRNA:   3'- agUCG-CGCCGU--UCA-CGC-----GAAGC-GGCG- -5'
12490 5' -58.3 NC_003324.1 + 32486 0.67 0.482376
Target:  5'- gUguGCGCGGUAAGaGCGC---GCCGa -3'
miRNA:   3'- -AguCGCGCCGUUCaCGCGaagCGGCg -5'
12490 5' -58.3 NC_003324.1 + 37513 0.69 0.379143
Target:  5'- cUguGCGCGGCAA-UGCGC-UCGauaGCa -3'
miRNA:   3'- -AguCGCGCCGUUcACGCGaAGCgg-CG- -5'
12490 5' -58.3 NC_003324.1 + 38171 0.7 0.321621
Target:  5'- cCAGCaCGGCGccgacGCGCUUCGCCa- -3'
miRNA:   3'- aGUCGcGCCGUuca--CGCGAAGCGGcg -5'
12490 5' -58.3 NC_003324.1 + 48404 0.68 0.433649
Target:  5'- cUCGGCuGCGGCcuuGGaaCGCUUCaCCGCc -3'
miRNA:   3'- -AGUCG-CGCCGu--UCacGCGAAGcGGCG- -5'
12490 5' -58.3 NC_003324.1 + 22260 0.68 0.424249
Target:  5'- ---uCGCGGCGAGcUGCGCcuugaugUCGUCGUu -3'
miRNA:   3'- agucGCGCCGUUC-ACGCGa------AGCGGCG- -5'
12490 5' -58.3 NC_003324.1 + 31036 0.66 0.554637
Target:  5'- cCGGCGCGGUcGGcGUucaacuccuGCUgacgCGCUGCg -3'
miRNA:   3'- aGUCGCGCCGuUCaCG---------CGAa---GCGGCG- -5'
12490 5' -58.3 NC_003324.1 + 47657 0.7 0.337367
Target:  5'- -gAGCuGUGGCAcgccGGUGCGCUggacaguuccgUCGgCGCg -3'
miRNA:   3'- agUCG-CGCCGU----UCACGCGA-----------AGCgGCG- -5'
12490 5' -58.3 NC_003324.1 + 42279 0.66 0.544084
Target:  5'- -gGGCGCGGgucggcaacgcUGAGUGCGC--CGCCuGCc -3'
miRNA:   3'- agUCGCGCC-----------GUUCACGCGaaGCGG-CG- -5'
12490 5' -58.3 NC_003324.1 + 34456 0.66 0.544084
Target:  5'- -aAGCGuCGGCGGGauuucGCGCUucugCGUCGUc -3'
miRNA:   3'- agUCGC-GCCGUUCa----CGCGAa---GCGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.