Results 41 - 60 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12490 | 5' | -58.3 | NC_003324.1 | + | 47657 | 0.7 | 0.337367 |
Target: 5'- -gAGCuGUGGCAcgccGGUGCGCUggacaguuccgUCGgCGCg -3' miRNA: 3'- agUCG-CGCCGU----UCACGCGA-----------AGCgGCG- -5' |
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12490 | 5' | -58.3 | NC_003324.1 | + | 49904 | 0.7 | 0.329425 |
Target: 5'- gUCGGCGC-GCucGUGCucgcCUUCGCUGCc -3' miRNA: 3'- -AGUCGCGcCGuuCACGc---GAAGCGGCG- -5' |
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12490 | 5' | -58.3 | NC_003324.1 | + | 1517 | 0.7 | 0.321621 |
Target: 5'- cCAGCgaggauccgGCGGCAguGGUGCGCggCGCUa- -3' miRNA: 3'- aGUCG---------CGCCGU--UCACGCGaaGCGGcg -5' |
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12490 | 5' | -58.3 | NC_003324.1 | + | 42279 | 0.66 | 0.544084 |
Target: 5'- -gGGCGCGGgucggcaacgcUGAGUGCGC--CGCCuGCc -3' miRNA: 3'- agUCGCGCC-----------GUUCACGCGaaGCGG-CG- -5' |
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12490 | 5' | -58.3 | NC_003324.1 | + | 26799 | 0.77 | 0.109831 |
Target: 5'- gCAGaCGCGGCc-GUGCGCUUggcuggcuuuggCGCCGCu -3' miRNA: 3'- aGUC-GCGCCGuuCACGCGAA------------GCGGCG- -5' |
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12490 | 5' | -58.3 | NC_003324.1 | + | 31036 | 0.66 | 0.554637 |
Target: 5'- cCGGCGCGGUcGGcGUucaacuccuGCUgacgCGCUGCg -3' miRNA: 3'- aGUCGCGCCGuUCaCG---------CGAa---GCGGCG- -5' |
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12490 | 5' | -58.3 | NC_003324.1 | + | 26361 | 0.68 | 0.418668 |
Target: 5'- uUCAGCucgcgauaccuguuCGGCAGGUGCuGCUUCcaguGCuCGCg -3' miRNA: 3'- -AGUCGc-------------GCCGUUCACG-CGAAG----CG-GCG- -5' |
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12490 | 5' | -58.3 | NC_003324.1 | + | 14513 | 0.68 | 0.424249 |
Target: 5'- aCuGCGCGGCAGG-GCGU----CCGCg -3' miRNA: 3'- aGuCGCGCCGUUCaCGCGaagcGGCG- -5' |
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12490 | 5' | -58.3 | NC_003324.1 | + | 22260 | 0.68 | 0.424249 |
Target: 5'- ---uCGCGGCGAGcUGCGCcuugaugUCGUCGUu -3' miRNA: 3'- agucGCGCCGUUC-ACGCGa------AGCGGCG- -5' |
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12490 | 5' | -58.3 | NC_003324.1 | + | 20796 | 0.66 | 0.523184 |
Target: 5'- gUUGGCgagGCGGCGgaccguguuGGUGaCGCgcaUCGCCGUu -3' miRNA: 3'- -AGUCG---CGCCGU---------UCAC-GCGa--AGCGGCG- -5' |
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12490 | 5' | -58.3 | NC_003324.1 | + | 35463 | 0.67 | 0.512849 |
Target: 5'- gUCGGCGauguCGGCGAGcguggggacgGCGa-UCGCCGUa -3' miRNA: 3'- -AGUCGC----GCCGUUCa---------CGCgaAGCGGCG- -5' |
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12490 | 5' | -58.3 | NC_003324.1 | + | 16113 | 0.66 | 0.523184 |
Target: 5'- gCAGCGaggugguccUGcGCAGG-GCGCUUCgguagcggggGCCGCg -3' miRNA: 3'- aGUCGC---------GC-CGUUCaCGCGAAG----------CGGCG- -5' |
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12490 | 5' | -58.3 | NC_003324.1 | + | 46319 | 0.67 | 0.502599 |
Target: 5'- aCAGCucGCGaGCGcGGUGgGCUcUGCCGUg -3' miRNA: 3'- aGUCG--CGC-CGU-UCACgCGAaGCGGCG- -5' |
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12490 | 5' | -58.3 | NC_003324.1 | + | 42530 | 0.67 | 0.499542 |
Target: 5'- gUCAGCaaCGGCAaaggcaccauugccAGUcGUGCUU-GCCGCa -3' miRNA: 3'- -AGUCGc-GCCGU--------------UCA-CGCGAAgCGGCG- -5' |
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12490 | 5' | -58.3 | NC_003324.1 | + | 7776 | 0.67 | 0.482376 |
Target: 5'- -aGGCGCGaucGCAAc-GgGCUUUGCCGCc -3' miRNA: 3'- agUCGCGC---CGUUcaCgCGAAGCGGCG- -5' |
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12490 | 5' | -58.3 | NC_003324.1 | + | 34906 | 0.67 | 0.469444 |
Target: 5'- gUCGGC-CGGCAGGauccacguugccgGCGCUccugcucuucaucugCGCCGCc -3' miRNA: 3'- -AGUCGcGCCGUUCa------------CGCGAa--------------GCGGCG- -5' |
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12490 | 5' | -58.3 | NC_003324.1 | + | 49417 | 0.67 | 0.462554 |
Target: 5'- aUCGGCGagccCGGCAGcgGCGCUUgGCUGa -3' miRNA: 3'- -AGUCGC----GCCGUUcaCGCGAAgCGGCg -5' |
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12490 | 5' | -58.3 | NC_003324.1 | + | 42098 | 0.68 | 0.452805 |
Target: 5'- aUCAGCaGgGGcCGGGaGCGCUUCGCacucguCGCc -3' miRNA: 3'- -AGUCG-CgCC-GUUCaCGCGAAGCG------GCG- -5' |
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12490 | 5' | -58.3 | NC_003324.1 | + | 7660 | 0.66 | 0.56525 |
Target: 5'- gCAGUGcCGGCug--GCGUUuaugugUCGCUGCa -3' miRNA: 3'- aGUCGC-GCCGuucaCGCGA------AGCGGCG- -5' |
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12490 | 5' | -58.3 | NC_003324.1 | + | 48404 | 0.68 | 0.433649 |
Target: 5'- cUCGGCuGCGGCcuuGGaaCGCUUCaCCGCc -3' miRNA: 3'- -AGUCG-CGCCGu--UCacGCGAAGcGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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