miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12490 5' -58.3 NC_003324.1 + 42380 0.66 0.575914
Target:  5'- cCGGCacGUGGCAGGcgGCGCacucagcgUUGCCGa -3'
miRNA:   3'- aGUCG--CGCCGUUCa-CGCGa-------AGCGGCg -5'
12490 5' -58.3 NC_003324.1 + 31184 0.68 0.443168
Target:  5'- gCAGC-CGaGCAGcaGCGCaUUGCCGCa -3'
miRNA:   3'- aGUCGcGC-CGUUcaCGCGaAGCGGCG- -5'
12490 5' -58.3 NC_003324.1 + 36119 0.68 0.414972
Target:  5'- --uGCGCaGCAAGUGCGCggCGaaaagacccUCGCg -3'
miRNA:   3'- aguCGCGcCGUUCACGCGaaGC---------GGCG- -5'
12490 5' -58.3 NC_003324.1 + 5496 0.75 0.165377
Target:  5'- cUCGGCGCcGCAGGUGCGggcgccauCUuccgagccgaaaUCGCCGCu -3'
miRNA:   3'- -AGUCGCGcCGUUCACGC--------GA------------AGCGGCG- -5'
12490 5' -58.3 NC_003324.1 + 40429 0.66 0.554637
Target:  5'- gCAGCGaaagcCGGCAAGacUGCuGCagCGCCGa -3'
miRNA:   3'- aGUCGC-----GCCGUUC--ACG-CGaaGCGGCg -5'
12490 5' -58.3 NC_003324.1 + 25777 0.66 0.544084
Target:  5'- --uGUGgGGCAAGgaccggaauacUGCGUccaccUCGCCGCg -3'
miRNA:   3'- aguCGCgCCGUUC-----------ACGCGa----AGCGGCG- -5'
12490 5' -58.3 NC_003324.1 + 50622 0.66 0.544084
Target:  5'- cUCGGCGuCGaGCAGGUcaacgcggGUGCUg-GCUGCg -3'
miRNA:   3'- -AGUCGC-GC-CGUUCA--------CGCGAagCGGCG- -5'
12490 5' -58.3 NC_003324.1 + 50869 0.66 0.544084
Target:  5'- cCGGUGUGGCAGcauUGC-CgUCGCCGUc -3'
miRNA:   3'- aGUCGCGCCGUUc--ACGcGaAGCGGCG- -5'
12490 5' -58.3 NC_003324.1 + 57031 0.67 0.502599
Target:  5'- -gAGCgGCGGCGAGgGCGCggaUGCCu- -3'
miRNA:   3'- agUCG-CGCCGUUCaCGCGaa-GCGGcg -5'
12490 5' -58.3 NC_003324.1 + 41992 0.68 0.443168
Target:  5'- cCGGaUGCGGCGAcUGCGa-UCGCCGa -3'
miRNA:   3'- aGUC-GCGCCGUUcACGCgaAGCGGCg -5'
12490 5' -58.3 NC_003324.1 + 37573 0.67 0.482376
Target:  5'- gUAGCGUGcGCAAGaaGCGCUaccagUCGCC-Ca -3'
miRNA:   3'- aGUCGCGC-CGUUCa-CGCGA-----AGCGGcG- -5'
12490 5' -58.3 NC_003324.1 + 39461 0.67 0.502599
Target:  5'- -gAGcCGCaGGCAAGc-UGCUUCGCCGg -3'
miRNA:   3'- agUC-GCG-CCGUUCacGCGAAGCGGCg -5'
12490 5' -58.3 NC_003324.1 + 23232 0.66 0.56525
Target:  5'- -gGGCGcCGGCAAGa-CGUUU-GCCGCc -3'
miRNA:   3'- agUCGC-GCCGUUCacGCGAAgCGGCG- -5'
12490 5' -58.3 NC_003324.1 + 27559 0.67 0.462554
Target:  5'- aCGGCacuuCGGCGgagaAGUuCGCaUCGCCGCa -3'
miRNA:   3'- aGUCGc---GCCGU----UCAcGCGaAGCGGCG- -5'
12490 5' -58.3 NC_003324.1 + 18908 0.66 0.554637
Target:  5'- cCGGCGUGaugGAGacugGCGCcgaccUUCGCCGCg -3'
miRNA:   3'- aGUCGCGCcg-UUCa---CGCG-----AAGCGGCG- -5'
12490 5' -58.3 NC_003324.1 + 2367 0.67 0.512849
Target:  5'- gCAGCccgcccgcaGgGGCGGGU-CGCggUCGCUGCg -3'
miRNA:   3'- aGUCG---------CgCCGUUCAcGCGa-AGCGGCG- -5'
12490 5' -58.3 NC_003324.1 + 56638 0.67 0.462554
Target:  5'- -gGGCgGCGGCAugGGUcGCGggcaaCUUCGcCCGCa -3'
miRNA:   3'- agUCG-CGCCGU--UCA-CGC-----GAAGC-GGCG- -5'
12490 5' -58.3 NC_003324.1 + 22108 0.68 0.424249
Target:  5'- gUCGGaCGCGcGCAAGgcUGCGCUcgacaugcgccUCGUCGa -3'
miRNA:   3'- -AGUC-GCGC-CGUUC--ACGCGA-----------AGCGGCg -5'
12490 5' -58.3 NC_003324.1 + 28313 0.66 0.554637
Target:  5'- gCAGCagucgaugacGCGGCucacgAAGccGCGaCUUCGCCGUc -3'
miRNA:   3'- aGUCG----------CGCCG-----UUCa-CGC-GAAGCGGCG- -5'
12490 5' -58.3 NC_003324.1 + 30662 0.66 0.544084
Target:  5'- cUCGcuCGCGGCAAGUaucugaGCaugaUCGCCGCu -3'
miRNA:   3'- -AGUc-GCGCCGUUCAcg----CGa---AGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.