Results 61 - 67 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12490 | 5' | -58.3 | NC_003324.1 | + | 39461 | 0.67 | 0.502599 |
Target: 5'- -gAGcCGCaGGCAAGc-UGCUUCGCCGg -3' miRNA: 3'- agUC-GCG-CCGUUCacGCGAAGCGGCg -5' |
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12490 | 5' | -58.3 | NC_003324.1 | + | 57031 | 0.67 | 0.502599 |
Target: 5'- -gAGCgGCGGCGAGgGCGCggaUGCCu- -3' miRNA: 3'- agUCG-CGCCGUUCaCGCGaa-GCGGcg -5' |
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12490 | 5' | -58.3 | NC_003324.1 | + | 32486 | 0.67 | 0.482376 |
Target: 5'- gUguGCGCGGUAAGaGCGC---GCCGa -3' miRNA: 3'- -AguCGCGCCGUUCaCGCGaagCGGCg -5' |
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12490 | 5' | -58.3 | NC_003324.1 | + | 37573 | 0.67 | 0.482376 |
Target: 5'- gUAGCGUGcGCAAGaaGCGCUaccagUCGCC-Ca -3' miRNA: 3'- aGUCGCGC-CGUUCa-CGCGA-----AGCGGcG- -5' |
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12490 | 5' | -58.3 | NC_003324.1 | + | 27559 | 0.67 | 0.462554 |
Target: 5'- aCGGCacuuCGGCGgagaAGUuCGCaUCGCCGCa -3' miRNA: 3'- aGUCGc---GCCGU----UCAcGCGaAGCGGCG- -5' |
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12490 | 5' | -58.3 | NC_003324.1 | + | 56638 | 0.67 | 0.462554 |
Target: 5'- -gGGCgGCGGCAugGGUcGCGggcaaCUUCGcCCGCa -3' miRNA: 3'- agUCG-CGCCGU--UCA-CGC-----GAAGC-GGCG- -5' |
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12490 | 5' | -58.3 | NC_003324.1 | + | 42380 | 0.66 | 0.575914 |
Target: 5'- cCGGCacGUGGCAGGcgGCGCacucagcgUUGCCGa -3' miRNA: 3'- aGUCG--CGCCGUUCa-CGCGa-------AGCGGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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