miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12493 5' -53.8 NC_003324.1 + 29867 0.66 0.7805
Target:  5'- cGUCGUgacaucaggcagggUGGAuacgGCGCGAUCuucGGCGCGc -3'
miRNA:   3'- -UAGCG--------------ACCU----UGCGCUAGuu-CUGCGCc -5'
12493 5' -53.8 NC_003324.1 + 23028 0.66 0.8126
Target:  5'- cAUCGCcaccggagacUGGGACGCGGUUAuuGuCGCGc -3'
miRNA:   3'- -UAGCG----------ACCUUGCGCUAGUu-CuGCGCc -5'
12493 5' -53.8 NC_003324.1 + 17423 0.66 0.8126
Target:  5'- cGUCGCccu--CGuCGGUCAuGACGCGGa -3'
miRNA:   3'- -UAGCGaccuuGC-GCUAGUuCUGCGCC- -5'
12493 5' -53.8 NC_003324.1 + 24881 0.66 0.8126
Target:  5'- cUCGUUGGAAC-CG-UCGAGgaaGCGGu -3'
miRNA:   3'- uAGCGACCUUGcGCuAGUUCug-CGCC- -5'
12493 5' -53.8 NC_003324.1 + 7767 0.66 0.803075
Target:  5'- cUCGCagGGAgGCGCGAUCGcaacGGGCuuugccgccGCGGc -3'
miRNA:   3'- uAGCGa-CCU-UGCGCUAGU----UCUG---------CGCC- -5'
12493 5' -53.8 NC_003324.1 + 40612 0.66 0.783494
Target:  5'- uUCGCUGGGGCcauccGCcgGAUCAGGGCGa-- -3'
miRNA:   3'- uAGCGACCUUG-----CG--CUAGUUCUGCgcc -5'
12493 5' -53.8 NC_003324.1 + 50926 0.66 0.793369
Target:  5'- uGUCGCUGGGcgaaccgccuGCaGCGAUguGGGCGUu- -3'
miRNA:   3'- -UAGCGACCU----------UG-CGCUAguUCUGCGcc -5'
12493 5' -53.8 NC_003324.1 + 30631 0.66 0.793369
Target:  5'- -cCGCUGGAguagagcaGCGCGucgCAGcGGCaGCGGc -3'
miRNA:   3'- uaGCGACCU--------UGCGCua-GUU-CUG-CGCC- -5'
12493 5' -53.8 NC_003324.1 + 17039 0.66 0.783494
Target:  5'- -gCGCUGGGuaaggaacuACGCGAUCugcugGCGGa -3'
miRNA:   3'- uaGCGACCU---------UGCGCUAGuucugCGCC- -5'
12493 5' -53.8 NC_003324.1 + 19017 0.67 0.77346
Target:  5'- --gGCUGGccucgAACGCGAUgCGcAGGCGCGu -3'
miRNA:   3'- uagCGACC-----UUGCGCUA-GU-UCUGCGCc -5'
12493 5' -53.8 NC_003324.1 + 43796 0.68 0.666929
Target:  5'- -gUGCcgGGAACGCcggCAAGGCGCGu -3'
miRNA:   3'- uaGCGa-CCUUGCGcuaGUUCUGCGCc -5'
12493 5' -53.8 NC_003324.1 + 40513 0.68 0.666929
Target:  5'- -aCGCccgaUGGAGCcaCGAUCGAG-CGCGGc -3'
miRNA:   3'- uaGCG----ACCUUGc-GCUAGUUCuGCGCC- -5'
12493 5' -53.8 NC_003324.1 + 57038 0.68 0.677916
Target:  5'- --gGCUGGGgaGCgGCGGcgAGGGCGCGGa -3'
miRNA:   3'- uagCGACCU--UG-CGCUagUUCUGCGCC- -5'
12493 5' -53.8 NC_003324.1 + 20786 0.68 0.721312
Target:  5'- -cCGCcGGAACGUuggCGAGGCgGCGGa -3'
miRNA:   3'- uaGCGaCCUUGCGcuaGUUCUG-CGCC- -5'
12493 5' -53.8 NC_003324.1 + 14540 0.69 0.633813
Target:  5'- -gCGCUGGcgcucaaggccGACGUGGUCAacauGGGuCGCGGc -3'
miRNA:   3'- uaGCGACC-----------UUGCGCUAGU----UCU-GCGCC- -5'
12493 5' -53.8 NC_003324.1 + 18497 0.69 0.622758
Target:  5'- cUCGUUGGcgaGCG-UCAcGGCGCGGg -3'
miRNA:   3'- uAGCGACCuugCGCuAGUuCUGCGCC- -5'
12493 5' -53.8 NC_003324.1 + 17181 0.69 0.622758
Target:  5'- -gCGCUGGcGCGUcuGUC-GGACGCGGc -3'
miRNA:   3'- uaGCGACCuUGCGc-UAGuUCUGCGCC- -5'
12493 5' -53.8 NC_003324.1 + 16432 0.7 0.58968
Target:  5'- gGUC-CUGGAcgACGCGAUCGAcggcaacgccGuCGCGGa -3'
miRNA:   3'- -UAGcGACCU--UGCGCUAGUU----------CuGCGCC- -5'
12493 5' -53.8 NC_003324.1 + 15665 0.71 0.493232
Target:  5'- -gCGCUcGAugACGCGAUCAAGGCG-GGc -3'
miRNA:   3'- uaGCGAcCU--UGCGCUAGUUCUGCgCC- -5'
12493 5' -53.8 NC_003324.1 + 42014 0.71 0.514128
Target:  5'- -gCGCaucgGGAACGCGGuaccUCcGGAUGCGGc -3'
miRNA:   3'- uaGCGa---CCUUGCGCU----AGuUCUGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.