miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12496 5' -53.5 NC_003324.1 + 1409 0.66 0.785404
Target:  5'- uUCACgAGGGAgucgAGCAcGUCGgAGGCgUGCu -3'
miRNA:   3'- uAGUGgUUCCU----UCGU-UAGC-UCCG-GCG- -5'
12496 5' -53.5 NC_003324.1 + 5990 0.66 0.795412
Target:  5'- -gCACgGuGGAGGaGAUCGAaGCCGCa -3'
miRNA:   3'- uaGUGgUuCCUUCgUUAGCUcCGGCG- -5'
12496 5' -53.5 NC_003324.1 + 53478 0.66 0.785404
Target:  5'- -aCACCcgcgcGGAAGC---CGAGGCCGa -3'
miRNA:   3'- uaGUGGuu---CCUUCGuuaGCUCCGGCg -5'
12496 5' -53.5 NC_003324.1 + 37651 0.66 0.764903
Target:  5'- gGUCGCCGAGGugguccGCAaugaacAUCGcaaGCCGCa -3'
miRNA:   3'- -UAGUGGUUCCuu----CGU------UAGCuc-CGGCG- -5'
12496 5' -53.5 NC_003324.1 + 34382 0.66 0.775231
Target:  5'- uUCGCCA----AGCGAUCGAGauaggcgaacucGCCGCc -3'
miRNA:   3'- uAGUGGUuccuUCGUUAGCUC------------CGGCG- -5'
12496 5' -53.5 NC_003324.1 + 29234 0.66 0.785404
Target:  5'- cUCACCAAGacGGCGGcuguUCG-GGCCuGCa -3'
miRNA:   3'- uAGUGGUUCcuUCGUU----AGCuCCGG-CG- -5'
12496 5' -53.5 NC_003324.1 + 56799 0.66 0.785404
Target:  5'- --uGCC--GGAGGguGUCGAGcuuGCCGCu -3'
miRNA:   3'- uagUGGuuCCUUCguUAGCUC---CGGCG- -5'
12496 5' -53.5 NC_003324.1 + 36714 0.67 0.722292
Target:  5'- uUCGCCGGGGAAaucuaugacccGCuAUCGcgcgggcacaAGGUCGCg -3'
miRNA:   3'- uAGUGGUUCCUU-----------CGuUAGC----------UCCGGCG- -5'
12496 5' -53.5 NC_003324.1 + 21380 0.67 0.722292
Target:  5'- uAUCGCCGgcgAGGcGGCGAaCGcGGCCGa -3'
miRNA:   3'- -UAGUGGU---UCCuUCGUUaGCuCCGGCg -5'
12496 5' -53.5 NC_003324.1 + 13178 0.67 0.722292
Target:  5'- cGUCAgCGAGGcugcgucggcGGCGGUCGGcGGCgGCg -3'
miRNA:   3'- -UAGUgGUUCCu---------UCGUUAGCU-CCGgCG- -5'
12496 5' -53.5 NC_003324.1 + 27347 0.67 0.743834
Target:  5'- -cCACCAAcgcGGAAGCcg-UGuucGGCCGCu -3'
miRNA:   3'- uaGUGGUU---CCUUCGuuaGCu--CCGGCG- -5'
12496 5' -53.5 NC_003324.1 + 14297 0.67 0.750208
Target:  5'- uUCAUCAAGGAagcgaccaacuacGGCAGUgaagcacgucagagCGAGGCaGCu -3'
miRNA:   3'- uAGUGGUUCCU-------------UCGUUA--------------GCUCCGgCG- -5'
12496 5' -53.5 NC_003324.1 + 42127 0.67 0.743834
Target:  5'- cGUCGCCAaugccgccgcgGGGAucAGCAAcagaccauGGGCCGCg -3'
miRNA:   3'- -UAGUGGU-----------UCCU--UCGUUagc-----UCCGGCG- -5'
12496 5' -53.5 NC_003324.1 + 19938 0.67 0.733116
Target:  5'- --gACCAGGGAcggaAGCAguAUCGAaGGCgCGUu -3'
miRNA:   3'- uagUGGUUCCU----UCGU--UAGCU-CCG-GCG- -5'
12496 5' -53.5 NC_003324.1 + 3219 0.67 0.720116
Target:  5'- cUCGCCAAGGGGcGCGucgaucacgccuUUGAGGCagGCg -3'
miRNA:   3'- uAGUGGUUCCUU-CGUu-----------AGCUCCGg-CG- -5'
12496 5' -53.5 NC_003324.1 + 32557 0.67 0.711375
Target:  5'- gAUCGCCGAGGcugccggcgaAGGCGA-CGAgggcauGGCUGCc -3'
miRNA:   3'- -UAGUGGUUCC----------UUCGUUaGCU------CCGGCG- -5'
12496 5' -53.5 NC_003324.1 + 18382 0.68 0.677069
Target:  5'- cUCACCAAGGccgGGGCAG-CGAuugcccgcgcgucGGCCGa -3'
miRNA:   3'- uAGUGGUUCC---UUCGUUaGCU-------------CCGGCg -5'
12496 5' -53.5 NC_003324.1 + 57038 0.68 0.667014
Target:  5'- --gGCUggGGAgcGGCGG-CGAGGgCGCg -3'
miRNA:   3'- uagUGGuuCCU--UCGUUaGCUCCgGCG- -5'
12496 5' -53.5 NC_003324.1 + 512 0.68 0.689309
Target:  5'- gAUCACCAAGGucGGCAGcUCGAccaucuaCCGCu -3'
miRNA:   3'- -UAGUGGUUCCu-UCGUU-AGCUcc-----GGCG- -5'
12496 5' -53.5 NC_003324.1 + 45920 0.68 0.655809
Target:  5'- -cCGCUucGGAAGCGAagcaagCGAcGCCGCa -3'
miRNA:   3'- uaGUGGuuCCUUCGUUa-----GCUcCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.