miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12496 5' -53.5 NC_003324.1 + 512 0.68 0.689309
Target:  5'- gAUCACCAAGGucGGCAGcUCGAccaucuaCCGCu -3'
miRNA:   3'- -UAGUGGUUCCu-UCGUU-AGCUcc-----GGCG- -5'
12496 5' -53.5 NC_003324.1 + 1409 0.66 0.785404
Target:  5'- uUCACgAGGGAgucgAGCAcGUCGgAGGCgUGCu -3'
miRNA:   3'- uAGUGgUUCCU----UCGU-UAGC-UCCG-GCG- -5'
12496 5' -53.5 NC_003324.1 + 3219 0.67 0.720116
Target:  5'- cUCGCCAAGGGGcGCGucgaucacgccuUUGAGGCagGCg -3'
miRNA:   3'- uAGUGGUUCCUU-CGUu-----------AGCUCCGg-CG- -5'
12496 5' -53.5 NC_003324.1 + 5990 0.66 0.795412
Target:  5'- -gCACgGuGGAGGaGAUCGAaGCCGCa -3'
miRNA:   3'- uaGUGgUuCCUUCgUUAGCUcCGGCG- -5'
12496 5' -53.5 NC_003324.1 + 13178 0.67 0.722292
Target:  5'- cGUCAgCGAGGcugcgucggcGGCGGUCGGcGGCgGCg -3'
miRNA:   3'- -UAGUgGUUCCu---------UCGUUAGCU-CCGgCG- -5'
12496 5' -53.5 NC_003324.1 + 14297 0.67 0.750208
Target:  5'- uUCAUCAAGGAagcgaccaacuacGGCAGUgaagcacgucagagCGAGGCaGCu -3'
miRNA:   3'- uAGUGGUUCCU-------------UCGUUA--------------GCUCCGgCG- -5'
12496 5' -53.5 NC_003324.1 + 14894 0.73 0.4103
Target:  5'- -cCGCCcAGGAAGCugcCGAugccGGCCGCg -3'
miRNA:   3'- uaGUGGuUCCUUCGuuaGCU----CCGGCG- -5'
12496 5' -53.5 NC_003324.1 + 18382 0.68 0.677069
Target:  5'- cUCACCAAGGccgGGGCAG-CGAuugcccgcgcgucGGCCGa -3'
miRNA:   3'- uAGUGGUUCC---UUCGUUaGCU-------------CCGGCg -5'
12496 5' -53.5 NC_003324.1 + 19938 0.67 0.733116
Target:  5'- --gACCAGGGAcggaAGCAguAUCGAaGGCgCGUu -3'
miRNA:   3'- uagUGGUUCCU----UCGU--UAGCU-CCG-GCG- -5'
12496 5' -53.5 NC_003324.1 + 21380 0.67 0.722292
Target:  5'- uAUCGCCGgcgAGGcGGCGAaCGcGGCCGa -3'
miRNA:   3'- -UAGUGGU---UCCuUCGUUaGCuCCGGCg -5'
12496 5' -53.5 NC_003324.1 + 21929 0.69 0.633343
Target:  5'- -cCGCCGAGGAGGCcc----GGCUGCg -3'
miRNA:   3'- uaGUGGUUCCUUCGuuagcuCCGGCG- -5'
12496 5' -53.5 NC_003324.1 + 24574 0.71 0.479054
Target:  5'- cGUCACCGcugcGGGcgaccAGCGcaggaucAUCGGGGCCGUa -3'
miRNA:   3'- -UAGUGGU----UCCu----UCGU-------UAGCUCCGGCG- -5'
12496 5' -53.5 NC_003324.1 + 26551 0.7 0.577331
Target:  5'- --uGCCGAGGucGAGCAAUUGAuGUCGCc -3'
miRNA:   3'- uagUGGUUCC--UUCGUUAGCUcCGGCG- -5'
12496 5' -53.5 NC_003324.1 + 27347 0.67 0.743834
Target:  5'- -cCACCAAcgcGGAAGCcg-UGuucGGCCGCu -3'
miRNA:   3'- uaGUGGUU---CCUUCGuuaGCu--CCGGCG- -5'
12496 5' -53.5 NC_003324.1 + 27765 0.7 0.581784
Target:  5'- cAUCGCCAAGGAgaAGC--UCGGcgccacgcaugagguGGUCGCg -3'
miRNA:   3'- -UAGUGGUUCCU--UCGuuAGCU---------------CCGGCG- -5'
12496 5' -53.5 NC_003324.1 + 29081 0.72 0.449434
Target:  5'- --uGCUAAGGAAGCGAaaUCGAcGCUGCc -3'
miRNA:   3'- uagUGGUUCCUUCGUU--AGCUcCGGCG- -5'
12496 5' -53.5 NC_003324.1 + 29234 0.66 0.785404
Target:  5'- cUCACCAAGacGGCGGcuguUCG-GGCCuGCa -3'
miRNA:   3'- uAGUGGUUCcuUCGUU----AGCuCCGG-CG- -5'
12496 5' -53.5 NC_003324.1 + 29666 0.74 0.363599
Target:  5'- uUCugcCCGAGGAaucgAGCGAcgaggccUUGAGGCCGCu -3'
miRNA:   3'- uAGu--GGUUCCU----UCGUU-------AGCUCCGGCG- -5'
12496 5' -53.5 NC_003324.1 + 32163 0.71 0.511739
Target:  5'- --aGCCGAGGc-GCAG-CGAGGCCGa -3'
miRNA:   3'- uagUGGUUCCuuCGUUaGCUCCGGCg -5'
12496 5' -53.5 NC_003324.1 + 32440 0.71 0.480093
Target:  5'- uUCACCGgcuacAGGAAGCcgggCGAuGCCGCu -3'
miRNA:   3'- uAGUGGU-----UCCUUCGuua-GCUcCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.