miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12496 5' -53.5 NC_003324.1 + 57038 0.68 0.667014
Target:  5'- --gGCUggGGAgcGGCGG-CGAGGgCGCg -3'
miRNA:   3'- uagUGGuuCCU--UCGUUaGCUCCgGCG- -5'
12496 5' -53.5 NC_003324.1 + 56799 0.66 0.785404
Target:  5'- --uGCC--GGAGGguGUCGAGcuuGCCGCu -3'
miRNA:   3'- uagUGGuuCCUUCguUAGCUC---CGGCG- -5'
12496 5' -53.5 NC_003324.1 + 56295 0.72 0.459536
Target:  5'- uGUCGCCGccGAucgAGCGAUaggCGAGGCUGCc -3'
miRNA:   3'- -UAGUGGUucCU---UCGUUA---GCUCCGGCG- -5'
12496 5' -53.5 NC_003324.1 + 56290 1.11 0.001005
Target:  5'- gAUCACCAAGGAAGCAAUCGAGGCCGCa -3'
miRNA:   3'- -UAGUGGUUCCUUCGUUAGCUCCGGCG- -5'
12496 5' -53.5 NC_003324.1 + 56141 0.7 0.577331
Target:  5'- uUCGCCAGccuGGAAGC---CGAcGGCCGUg -3'
miRNA:   3'- uAGUGGUU---CCUUCGuuaGCU-CCGGCG- -5'
12496 5' -53.5 NC_003324.1 + 53478 0.66 0.785404
Target:  5'- -aCACCcgcgcGGAAGC---CGAGGCCGa -3'
miRNA:   3'- uaGUGGuu---CCUUCGuuaGCUCCGGCg -5'
12496 5' -53.5 NC_003324.1 + 49460 0.72 0.429605
Target:  5'- uUUGCCcGGGucGCuuUCGAGGUCGCc -3'
miRNA:   3'- uAGUGGuUCCuuCGuuAGCUCCGGCG- -5'
12496 5' -53.5 NC_003324.1 + 49264 0.74 0.338735
Target:  5'- --gAUCGAGGAGcCGAUCGAGGCUGUc -3'
miRNA:   3'- uagUGGUUCCUUcGUUAGCUCCGGCG- -5'
12496 5' -53.5 NC_003324.1 + 45920 0.68 0.655809
Target:  5'- -cCGCUucGGAAGCGAagcaagCGAcGCCGCa -3'
miRNA:   3'- uaGUGGuuCCUUCGUUa-----GCUcCGGCG- -5'
12496 5' -53.5 NC_003324.1 + 42127 0.67 0.743834
Target:  5'- cGUCGCCAaugccgccgcgGGGAucAGCAAcagaccauGGGCCGCg -3'
miRNA:   3'- -UAGUGGU-----------UCCU--UCGUUagc-----UCCGGCG- -5'
12496 5' -53.5 NC_003324.1 + 40327 0.7 0.555192
Target:  5'- -gCACgCAAGGcGGCAGUCGAGcgggaGCCaGCa -3'
miRNA:   3'- uaGUG-GUUCCuUCGUUAGCUC-----CGG-CG- -5'
12496 5' -53.5 NC_003324.1 + 39956 0.71 0.511739
Target:  5'- gAUCGgCAAGGAAGCGgccgacaagaagGUCGAGGacaGCc -3'
miRNA:   3'- -UAGUgGUUCCUUCGU------------UAGCUCCgg-CG- -5'
12496 5' -53.5 NC_003324.1 + 39816 0.69 0.622103
Target:  5'- -aCACCAAGGccGCcauGUgGuGGCUGCa -3'
miRNA:   3'- uaGUGGUUCCuuCGu--UAgCuCCGGCG- -5'
12496 5' -53.5 NC_003324.1 + 37651 0.66 0.764903
Target:  5'- gGUCGCCGAGGugguccGCAaugaacAUCGcaaGCCGCa -3'
miRNA:   3'- -UAGUGGUUCCuu----CGU------UAGCuc-CGGCG- -5'
12496 5' -53.5 NC_003324.1 + 36714 0.67 0.722292
Target:  5'- uUCGCCGGGGAAaucuaugacccGCuAUCGcgcgggcacaAGGUCGCg -3'
miRNA:   3'- uAGUGGUUCCUU-----------CGuUAGC----------UCCGGCG- -5'
12496 5' -53.5 NC_003324.1 + 35733 0.69 0.622103
Target:  5'- -cCGCCAagaAGGAGGC---CGAGGCCa- -3'
miRNA:   3'- uaGUGGU---UCCUUCGuuaGCUCCGGcg -5'
12496 5' -53.5 NC_003324.1 + 34382 0.66 0.775231
Target:  5'- uUCGCCA----AGCGAUCGAGauaggcgaacucGCCGCc -3'
miRNA:   3'- uAGUGGUuccuUCGUUAGCUC------------CGGCG- -5'
12496 5' -53.5 NC_003324.1 + 32557 0.67 0.711375
Target:  5'- gAUCGCCGAGGcugccggcgaAGGCGA-CGAgggcauGGCUGCc -3'
miRNA:   3'- -UAGUGGUUCC----------UUCGUUaGCU------CCGGCG- -5'
12496 5' -53.5 NC_003324.1 + 32440 0.71 0.480093
Target:  5'- uUCACCGgcuacAGGAAGCcgggCGAuGCCGCu -3'
miRNA:   3'- uAGUGGU-----UCCUUCGuua-GCUcCGGCG- -5'
12496 5' -53.5 NC_003324.1 + 32163 0.71 0.511739
Target:  5'- --aGCCGAGGc-GCAG-CGAGGCCGa -3'
miRNA:   3'- uagUGGUUCCuuCGUUaGCUCCGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.