miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12497 3' -49.4 NC_003324.1 + 56523 1.14 0.0017
Target:  5'- cUGCGCACAACAUUUGGCAUGCGAUGCg -3'
miRNA:   3'- -ACGCGUGUUGUAAACCGUACGCUACG- -5'
12497 3' -49.4 NC_003324.1 + 35526 0.76 0.482125
Target:  5'- cUGCGCAcCGACGUUggUGGC-UGUGAucUGCg -3'
miRNA:   3'- -ACGCGU-GUUGUAA--ACCGuACGCU--ACG- -5'
12497 3' -49.4 NC_003324.1 + 42385 0.74 0.548431
Target:  5'- gGCGCcCGGCAcgUGGCAgGCGgcGCa -3'
miRNA:   3'- aCGCGuGUUGUaaACCGUaCGCuaCG- -5'
12497 3' -49.4 NC_003324.1 + 33379 0.72 0.663663
Target:  5'- cGCGCGCAACuccggccacUGGCGgagaacgcuUGCGAUGa -3'
miRNA:   3'- aCGCGUGUUGuaa------ACCGU---------ACGCUACg -5'
12497 3' -49.4 NC_003324.1 + 27060 0.72 0.674046
Target:  5'- cGCGaCGCGGCGUUaccguugUGGCcgGUGcgGCu -3'
miRNA:   3'- aCGC-GUGUUGUAA-------ACCGuaCGCuaCG- -5'
12497 3' -49.4 NC_003324.1 + 41679 0.72 0.698117
Target:  5'- cGCGCACuguGCcaacGGUA-GCGAUGCg -3'
miRNA:   3'- aCGCGUGu--UGuaaaCCGUaCGCUACG- -5'
12497 3' -49.4 NC_003324.1 + 50647 0.71 0.742998
Target:  5'- gGCGCACgAACAUcUGcGC-UGCGAcgguUGCg -3'
miRNA:   3'- aCGCGUG-UUGUAaAC-CGuACGCU----ACG- -5'
12497 3' -49.4 NC_003324.1 + 54881 0.71 0.753941
Target:  5'- cGCGaACGGCGc--GGCGgucUGCGAUGCg -3'
miRNA:   3'- aCGCgUGUUGUaaaCCGU---ACGCUACG- -5'
12497 3' -49.4 NC_003324.1 + 143 0.71 0.764746
Target:  5'- gGCGCAUAAgAgcgUGGC-UGCGGcagGCa -3'
miRNA:   3'- aCGCGUGUUgUaa-ACCGuACGCUa--CG- -5'
12497 3' -49.4 NC_003324.1 + 44313 0.69 0.825945
Target:  5'- cGUGCACAGCGUU--GCGcGCGAUcaGCu -3'
miRNA:   3'- aCGCGUGUUGUAAacCGUaCGCUA--CG- -5'
12497 3' -49.4 NC_003324.1 + 41624 0.69 0.853656
Target:  5'- cGCGCcgcugucguUAGCGUUUGGCAcGCGuUGUu -3'
miRNA:   3'- aCGCGu--------GUUGUAAACCGUaCGCuACG- -5'
12497 3' -49.4 NC_003324.1 + 19393 0.69 0.862391
Target:  5'- gGCGCGCGucgcgccguGCAUgaGGUcgGCuaGAUGCu -3'
miRNA:   3'- aCGCGUGU---------UGUAaaCCGuaCG--CUACG- -5'
12497 3' -49.4 NC_003324.1 + 44512 0.68 0.87086
Target:  5'- -uCGgACGGCAcgc-GCAUGCGGUGCg -3'
miRNA:   3'- acGCgUGUUGUaaacCGUACGCUACG- -5'
12497 3' -49.4 NC_003324.1 + 8210 0.68 0.879054
Target:  5'- aGCGCGCAGCugcccGGCggGUGAguuucaGCa -3'
miRNA:   3'- aCGCGUGUUGuaaa-CCGuaCGCUa-----CG- -5'
12497 3' -49.4 NC_003324.1 + 22932 0.68 0.886187
Target:  5'- aGUGCGCGACAauaaccGCGUccagucuccggugGCGAUGCg -3'
miRNA:   3'- aCGCGUGUUGUaaac--CGUA-------------CGCUACG- -5'
12497 3' -49.4 NC_003324.1 + 1999 0.68 0.886965
Target:  5'- aGCGCAUucucuGACA-UUGGCuuGUGUGcAUGCc -3'
miRNA:   3'- aCGCGUG-----UUGUaAACCG--UACGC-UACG- -5'
12497 3' -49.4 NC_003324.1 + 17539 0.68 0.886965
Target:  5'- cGCGUcgGCGAUcggaaccaaagGUccGGCAUGCcGAUGCg -3'
miRNA:   3'- aCGCG--UGUUG-----------UAaaCCGUACG-CUACG- -5'
12497 3' -49.4 NC_003324.1 + 33668 0.68 0.890049
Target:  5'- cUGCGCaaaGCAGCAgg-GGCgAUGUGAgaaaugacagauagcUGCa -3'
miRNA:   3'- -ACGCG---UGUUGUaaaCCG-UACGCU---------------ACG- -5'
12497 3' -49.4 NC_003324.1 + 47382 0.68 0.893839
Target:  5'- cGCGCGC------UGGUucgacaaAUGCGAUGCa -3'
miRNA:   3'- aCGCGUGuuguaaACCG-------UACGCUACG- -5'
12497 3' -49.4 NC_003324.1 + 37756 0.68 0.894588
Target:  5'- -aCGCACcguCAUgcGGCuUGCGAUGUu -3'
miRNA:   3'- acGCGUGuu-GUAaaCCGuACGCUACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.