miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12497 3' -49.4 NC_003324.1 + 33668 0.68 0.890049
Target:  5'- cUGCGCaaaGCAGCAgg-GGCgAUGUGAgaaaugacagauagcUGCa -3'
miRNA:   3'- -ACGCG---UGUUGUaaaCCG-UACGCU---------------ACG- -5'
12497 3' -49.4 NC_003324.1 + 49411 0.65 0.957251
Target:  5'- cGcCGCACAGCAcgUGcagauacucacgauGUA-GCGAUGCg -3'
miRNA:   3'- aC-GCGUGUUGUaaAC--------------CGUaCGCUACG- -5'
12497 3' -49.4 NC_003324.1 + 5280 0.66 0.949608
Target:  5'- cGCGCcaGCGAUAgaggGGUAaGCGAggGCa -3'
miRNA:   3'- aCGCG--UGUUGUaaa-CCGUaCGCUa-CG- -5'
12497 3' -49.4 NC_003324.1 + 22995 0.67 0.922092
Target:  5'- cGCGCACucuucuuucGGCcgUaucGGCAUG-GAUGCu -3'
miRNA:   3'- aCGCGUG---------UUGuaAa--CCGUACgCUACG- -5'
12497 3' -49.4 NC_003324.1 + 9733 0.67 0.915671
Target:  5'- cGcCGCcCAGCGcgUUGGCGUugccgGCGGUGUu -3'
miRNA:   3'- aC-GCGuGUUGUa-AACCGUA-----CGCUACG- -5'
12497 3' -49.4 NC_003324.1 + 57338 0.66 0.949608
Target:  5'- aGCGCaAUAGCAggcUGGCcgcuUGCGAcccuugGCg -3'
miRNA:   3'- aCGCG-UGUUGUaa-ACCGu---ACGCUa-----CG- -5'
12497 3' -49.4 NC_003324.1 + 42202 0.67 0.928207
Target:  5'- cGCG-GCGGCA-UUGGCgacgaGUGCGAaGCg -3'
miRNA:   3'- aCGCgUGUUGUaAACCG-----UACGCUaCG- -5'
12497 3' -49.4 NC_003324.1 + 19146 0.67 0.922092
Target:  5'- aGCGCgACGACAaagGGCAaaUGgGcUGCa -3'
miRNA:   3'- aCGCG-UGUUGUaaaCCGU--ACgCuACG- -5'
12497 3' -49.4 NC_003324.1 + 37756 0.68 0.894588
Target:  5'- -aCGCACcguCAUgcGGCuUGCGAUGUu -3'
miRNA:   3'- acGCGUGuu-GUAaaCCGuACGCUACG- -5'
12497 3' -49.4 NC_003324.1 + 41624 0.69 0.853656
Target:  5'- cGCGCcgcugucguUAGCGUUUGGCAcGCGuUGUu -3'
miRNA:   3'- aCGCGu--------GUUGUAAACCGUaCGCuACG- -5'
12497 3' -49.4 NC_003324.1 + 42385 0.74 0.548431
Target:  5'- gGCGCcCGGCAcgUGGCAgGCGgcGCa -3'
miRNA:   3'- aCGCGuGUUGUaaACCGUaCGCuaCG- -5'
12497 3' -49.4 NC_003324.1 + 48742 0.66 0.944713
Target:  5'- aUGCGCAgcCAGCGUcuccUGGCucAUGcCGAUGa -3'
miRNA:   3'- -ACGCGU--GUUGUAa---ACCG--UAC-GCUACg -5'
12497 3' -49.4 NC_003324.1 + 43036 0.66 0.944713
Target:  5'- cUGUGCACAugGCGUcaaGGCAUGgGAc-- -3'
miRNA:   3'- -ACGCGUGU--UGUAaa-CCGUACgCUacg -5'
12497 3' -49.4 NC_003324.1 + 33590 0.68 0.901916
Target:  5'- -uCGCACAuuACGUUUGGCG-GCGGg-- -3'
miRNA:   3'- acGCGUGU--UGUAAACCGUaCGCUacg -5'
12497 3' -49.4 NC_003324.1 + 35692 0.68 0.897554
Target:  5'- cUGCGCGCAGCAgaagccgacaucGGCAagaaggaaGCcGAUGCg -3'
miRNA:   3'- -ACGCGUGUUGUaaa---------CCGUa-------CG-CUACG- -5'
12497 3' -49.4 NC_003324.1 + 41764 0.67 0.928207
Target:  5'- gGCGCAUcgcuACcgUUGGCAcagUGCGcgucgGCu -3'
miRNA:   3'- aCGCGUGu---UGuaAACCGU---ACGCua---CG- -5'
12497 3' -49.4 NC_003324.1 + 8210 0.68 0.879054
Target:  5'- aGCGCGCAGCugcccGGCggGUGAguuucaGCa -3'
miRNA:   3'- aCGCGUGUUGuaaa-CCGuaCGCUa-----CG- -5'
12497 3' -49.4 NC_003324.1 + 44313 0.69 0.825945
Target:  5'- cGUGCACAGCGUU--GCGcGCGAUcaGCu -3'
miRNA:   3'- aCGCGUGUUGUAAacCGUaCGCUA--CG- -5'
12497 3' -49.4 NC_003324.1 + 7775 0.67 0.922092
Target:  5'- cGCGC-CggUGUUUccggGGUcgGCGGUGUg -3'
miRNA:   3'- aCGCGuGuuGUAAA----CCGuaCGCUACG- -5'
12497 3' -49.4 NC_003324.1 + 13429 0.68 0.901916
Target:  5'- aGCGCGuCGcAUGUUUGGuCcgGCGcgGCu -3'
miRNA:   3'- aCGCGU-GU-UGUAAACC-GuaCGCuaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.