Results 21 - 40 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12497 | 3' | -49.4 | NC_003324.1 | + | 35403 | 0.66 | 0.939516 |
Target: 5'- cGCGCGCAugGUUUccucGCccuCGGUGCg -3' miRNA: 3'- aCGCGUGUugUAAAc---CGuacGCUACG- -5' |
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12497 | 3' | -49.4 | NC_003324.1 | + | 33668 | 0.68 | 0.890049 |
Target: 5'- cUGCGCaaaGCAGCAgg-GGCgAUGUGAgaaaugacagauagcUGCa -3' miRNA: 3'- -ACGCG---UGUUGUaaaCCG-UACGCU---------------ACG- -5' |
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12497 | 3' | -49.4 | NC_003324.1 | + | 33590 | 0.68 | 0.901916 |
Target: 5'- -uCGCACAuuACGUUUGGCG-GCGGg-- -3' miRNA: 3'- acGCGUGU--UGUAAACCGUaCGCUacg -5' |
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12497 | 3' | -49.4 | NC_003324.1 | + | 33379 | 0.72 | 0.663663 |
Target: 5'- cGCGCGCAACuccggccacUGGCGgagaacgcuUGCGAUGa -3' miRNA: 3'- aCGCGUGUUGuaa------ACCGU---------ACGCUACg -5' |
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12497 | 3' | -49.4 | NC_003324.1 | + | 30005 | 0.67 | 0.934014 |
Target: 5'- gGUGCACuc----UGGCGacGCGAUGCu -3' miRNA: 3'- aCGCGUGuuguaaACCGUa-CGCUACG- -5' |
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12497 | 3' | -49.4 | NC_003324.1 | + | 28551 | 0.67 | 0.922092 |
Target: 5'- cGCGCuCAACA--UGGCG-GCGuuaGCa -3' miRNA: 3'- aCGCGuGUUGUaaACCGUaCGCua-CG- -5' |
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12497 | 3' | -49.4 | NC_003324.1 | + | 27060 | 0.72 | 0.674046 |
Target: 5'- cGCGaCGCGGCGUUaccguugUGGCcgGUGcgGCu -3' miRNA: 3'- aCGC-GUGUUGUAA-------ACCGuaCGCuaCG- -5' |
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12497 | 3' | -49.4 | NC_003324.1 | + | 24287 | 0.66 | 0.944713 |
Target: 5'- cUGgGCACGGCGgagcUUGGCGaagGCGucGCg -3' miRNA: 3'- -ACgCGUGUUGUa---AACCGUa--CGCuaCG- -5' |
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12497 | 3' | -49.4 | NC_003324.1 | + | 22995 | 0.67 | 0.922092 |
Target: 5'- cGCGCACucuucuuucGGCcgUaucGGCAUG-GAUGCu -3' miRNA: 3'- aCGCGUG---------UUGuaAa--CCGUACgCUACG- -5' |
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12497 | 3' | -49.4 | NC_003324.1 | + | 22932 | 0.68 | 0.886187 |
Target: 5'- aGUGCGCGACAauaaccGCGUccagucuccggugGCGAUGCg -3' miRNA: 3'- aCGCGUGUUGUaaac--CGUA-------------CGCUACG- -5' |
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12497 | 3' | -49.4 | NC_003324.1 | + | 20659 | 0.66 | 0.954207 |
Target: 5'- aGUGCuuCGACca--GGCG-GCGAUGCu -3' miRNA: 3'- aCGCGu-GUUGuaaaCCGUaCGCUACG- -5' |
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12497 | 3' | -49.4 | NC_003324.1 | + | 19393 | 0.69 | 0.862391 |
Target: 5'- gGCGCGCGucgcgccguGCAUgaGGUcgGCuaGAUGCu -3' miRNA: 3'- aCGCGUGU---------UGUAaaCCGuaCG--CUACG- -5' |
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12497 | 3' | -49.4 | NC_003324.1 | + | 19146 | 0.67 | 0.922092 |
Target: 5'- aGCGCgACGACAaagGGCAaaUGgGcUGCa -3' miRNA: 3'- aCGCG-UGUUGUaaaCCGU--ACgCuACG- -5' |
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12497 | 3' | -49.4 | NC_003324.1 | + | 19007 | 0.66 | 0.949608 |
Target: 5'- gGCuGCAC-GCGgcUGGCcucgaacGCGAUGCg -3' miRNA: 3'- aCG-CGUGuUGUaaACCGua-----CGCUACG- -5' |
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12497 | 3' | -49.4 | NC_003324.1 | + | 17539 | 0.68 | 0.886965 |
Target: 5'- cGCGUcgGCGAUcggaaccaaagGUccGGCAUGCcGAUGCg -3' miRNA: 3'- aCGCG--UGUUG-----------UAaaCCGUACG-CUACG- -5' |
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12497 | 3' | -49.4 | NC_003324.1 | + | 14514 | 0.66 | 0.954207 |
Target: 5'- -cUGCGCGGCAg--GGCGUccGCGAcaagGCg -3' miRNA: 3'- acGCGUGUUGUaaaCCGUA--CGCUa---CG- -5' |
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12497 | 3' | -49.4 | NC_003324.1 | + | 13429 | 0.68 | 0.901916 |
Target: 5'- aGCGCGuCGcAUGUUUGGuCcgGCGcgGCu -3' miRNA: 3'- aCGCGU-GU-UGUAAACC-GuaCGCuaCG- -5' |
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12497 | 3' | -49.4 | NC_003324.1 | + | 9733 | 0.67 | 0.915671 |
Target: 5'- cGcCGCcCAGCGcgUUGGCGUugccgGCGGUGUu -3' miRNA: 3'- aC-GCGuGUUGUa-AACCGUA-----CGCUACG- -5' |
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12497 | 3' | -49.4 | NC_003324.1 | + | 8210 | 0.68 | 0.879054 |
Target: 5'- aGCGCGCAGCugcccGGCggGUGAguuucaGCa -3' miRNA: 3'- aCGCGUGUUGuaaa-CCGuaCGCUa-----CG- -5' |
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12497 | 3' | -49.4 | NC_003324.1 | + | 7775 | 0.67 | 0.922092 |
Target: 5'- cGCGC-CggUGUUUccggGGUcgGCGGUGUg -3' miRNA: 3'- aCGCGuGuuGUAAA----CCGuaCGCUACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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