miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12499 3' -55.5 NC_003324.1 + 11154 0.66 0.67221
Target:  5'- cGGUCu--GGCGGCCGGCUcGCa---- -3'
miRNA:   3'- -CCAGcguUCGCCGGUCGGaCGauaac -5'
12499 3' -55.5 NC_003324.1 + 14586 0.74 0.263222
Target:  5'- cGG-CGCAAGCGGCCGGCg-GCg---- -3'
miRNA:   3'- -CCaGCGUUCGCCGGUCGgaCGauaac -5'
12499 3' -55.5 NC_003324.1 + 17344 0.67 0.650125
Target:  5'- uGGUCGCAcaGGCgcucGGCUucacGCCUGCg---- -3'
miRNA:   3'- -CCAGCGU--UCG----CCGGu---CGGACGauaac -5'
12499 3' -55.5 NC_003324.1 + 23631 0.67 0.616896
Target:  5'- cGUCGcCGAGCGcGCCcGCCgccacGCUGUg- -3'
miRNA:   3'- cCAGC-GUUCGC-CGGuCGGa----CGAUAac -5'
12499 3' -55.5 NC_003324.1 + 28980 0.68 0.551043
Target:  5'- cGGUCGCAgcgaaGGacgaGGCCGGCCaGUgg-UGg -3'
miRNA:   3'- -CCAGCGU-----UCg---CCGGUCGGaCGauaAC- -5'
12499 3' -55.5 NC_003324.1 + 30580 0.71 0.38117
Target:  5'- cGGUCGCAGGCGcaguuuCCgagGGCCUGCUc--- -3'
miRNA:   3'- -CCAGCGUUCGCc-----GG---UCGGACGAuaac -5'
12499 3' -55.5 NC_003324.1 + 35465 0.66 0.67221
Target:  5'- --gCGCGGGCGGCCgAGCagGCUGc-- -3'
miRNA:   3'- ccaGCGUUCGCCGG-UCGgaCGAUaac -5'
12499 3' -55.5 NC_003324.1 + 42755 0.71 0.399338
Target:  5'- cGGUUGCcgguccuGGUGGCCcggcgaauGGCCUuGCUGUUGc -3'
miRNA:   3'- -CCAGCGu------UCGCCGG--------UCGGA-CGAUAAC- -5'
12499 3' -55.5 NC_003324.1 + 42956 0.71 0.372295
Target:  5'- cGGUCGCAGauccucGCgGGCCGGCCgGCa---- -3'
miRNA:   3'- -CCAGCGUU------CG-CCGGUCGGaCGauaac -5'
12499 3' -55.5 NC_003324.1 + 53196 0.66 0.705023
Target:  5'- gGGUgGUAgcuGGCGGCCGGCUUcacaacgaaaGCUGc-- -3'
miRNA:   3'- -CCAgCGU---UCGCCGGUCGGA----------CGAUaac -5'
12499 3' -55.5 NC_003324.1 + 57251 1.09 0.000809
Target:  5'- gGGUCGCAAGCGGCCAGCCUGCUAUUGc -3'
miRNA:   3'- -CCAGCGUUCGCCGGUCGGACGAUAAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.