Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12499 | 3' | -55.5 | NC_003324.1 | + | 57251 | 1.09 | 0.000809 |
Target: 5'- gGGUCGCAAGCGGCCAGCCUGCUAUUGc -3' miRNA: 3'- -CCAGCGUUCGCCGGUCGGACGAUAAC- -5' |
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12499 | 3' | -55.5 | NC_003324.1 | + | 14586 | 0.74 | 0.263222 |
Target: 5'- cGG-CGCAAGCGGCCGGCg-GCg---- -3' miRNA: 3'- -CCaGCGUUCGCCGGUCGgaCGauaac -5' |
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12499 | 3' | -55.5 | NC_003324.1 | + | 11154 | 0.66 | 0.67221 |
Target: 5'- cGGUCu--GGCGGCCGGCUcGCa---- -3' miRNA: 3'- -CCAGcguUCGCCGGUCGGaCGauaac -5' |
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12499 | 3' | -55.5 | NC_003324.1 | + | 53196 | 0.66 | 0.705023 |
Target: 5'- gGGUgGUAgcuGGCGGCCGGCUUcacaacgaaaGCUGc-- -3' miRNA: 3'- -CCAgCGU---UCGCCGGUCGGA----------CGAUaac -5' |
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12499 | 3' | -55.5 | NC_003324.1 | + | 30580 | 0.71 | 0.38117 |
Target: 5'- cGGUCGCAGGCGcaguuuCCgagGGCCUGCUc--- -3' miRNA: 3'- -CCAGCGUUCGCc-----GG---UCGGACGAuaac -5' |
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12499 | 3' | -55.5 | NC_003324.1 | + | 42755 | 0.71 | 0.399338 |
Target: 5'- cGGUUGCcgguccuGGUGGCCcggcgaauGGCCUuGCUGUUGc -3' miRNA: 3'- -CCAGCGu------UCGCCGG--------UCGGA-CGAUAAC- -5' |
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12499 | 3' | -55.5 | NC_003324.1 | + | 28980 | 0.68 | 0.551043 |
Target: 5'- cGGUCGCAgcgaaGGacgaGGCCGGCCaGUgg-UGg -3' miRNA: 3'- -CCAGCGU-----UCg---CCGGUCGGaCGauaAC- -5' |
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12499 | 3' | -55.5 | NC_003324.1 | + | 23631 | 0.67 | 0.616896 |
Target: 5'- cGUCGcCGAGCGcGCCcGCCgccacGCUGUg- -3' miRNA: 3'- cCAGC-GUUCGC-CGGuCGGa----CGAUAac -5' |
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12499 | 3' | -55.5 | NC_003324.1 | + | 17344 | 0.67 | 0.650125 |
Target: 5'- uGGUCGCAcaGGCgcucGGCUucacGCCUGCg---- -3' miRNA: 3'- -CCAGCGU--UCG----CCGGu---CGGACGauaac -5' |
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12499 | 3' | -55.5 | NC_003324.1 | + | 35465 | 0.66 | 0.67221 |
Target: 5'- --gCGCGGGCGGCCgAGCagGCUGc-- -3' miRNA: 3'- ccaGCGUUCGCCGG-UCGgaCGAUaac -5' |
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12499 | 3' | -55.5 | NC_003324.1 | + | 42956 | 0.71 | 0.372295 |
Target: 5'- cGGUCGCAGauccucGCgGGCCGGCCgGCa---- -3' miRNA: 3'- -CCAGCGUU------CG-CCGGUCGGaCGauaac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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