miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12499 5' -60 NC_003324.1 + 57287 1.1 0.000365
Target:  5'- gCUCAACGCCGGUCGUGCCGCCCUCGCc -3'
miRNA:   3'- -GAGUUGCGGCCAGCACGGCGGGAGCG- -5'
12499 5' -60 NC_003324.1 + 20601 0.76 0.109684
Target:  5'- aUgGGCGCuugCGGUCGgcggGCaCGCCCUCGCu -3'
miRNA:   3'- gAgUUGCG---GCCAGCa---CG-GCGGGAGCG- -5'
12499 5' -60 NC_003324.1 + 49896 0.76 0.115769
Target:  5'- aUCGcuGCGUCGGcgcgcUCGUGCuCGCCUUCGCu -3'
miRNA:   3'- gAGU--UGCGGCC-----AGCACG-GCGGGAGCG- -5'
12499 5' -60 NC_003324.1 + 54594 0.75 0.135961
Target:  5'- --gAACGCCGGUCGcGCUGCaggCUUCGCg -3'
miRNA:   3'- gagUUGCGGCCAGCaCGGCG---GGAGCG- -5'
12499 5' -60 NC_003324.1 + 32252 0.74 0.151172
Target:  5'- gUCAGCGCCcccGGUCGUGUCGggaCgCUCGCc -3'
miRNA:   3'- gAGUUGCGG---CCAGCACGGCg--G-GAGCG- -5'
12499 5' -60 NC_003324.1 + 28622 0.74 0.159345
Target:  5'- cCUCGugGcCCGGaUCGUugcggGCCGCCUugUCGCg -3'
miRNA:   3'- -GAGUugC-GGCC-AGCA-----CGGCGGG--AGCG- -5'
12499 5' -60 NC_003324.1 + 54334 0.73 0.176894
Target:  5'- --uGAUGCCGGUCcauggcaaccgGUGCCGCgCCUuCGCu -3'
miRNA:   3'- gagUUGCGGCCAG-----------CACGGCG-GGA-GCG- -5'
12499 5' -60 NC_003324.1 + 6281 0.71 0.258666
Target:  5'- uUCAugGCuucgaCGGUCGcagcaaggGCUGCCuCUCGCa -3'
miRNA:   3'- gAGUugCG-----GCCAGCa-------CGGCGG-GAGCG- -5'
12499 5' -60 NC_003324.1 + 21514 0.71 0.258666
Target:  5'- gCUCAAgGUCGGaCG-GCCGCCacggCGCa -3'
miRNA:   3'- -GAGUUgCGGCCaGCaCGGCGGga--GCG- -5'
12499 5' -60 NC_003324.1 + 19384 0.71 0.271648
Target:  5'- aUCGACGCCGGcgCGcGUCGCgCCgUGCa -3'
miRNA:   3'- gAGUUGCGGCCa-GCaCGGCG-GGaGCG- -5'
12499 5' -60 NC_003324.1 + 49006 0.7 0.306386
Target:  5'- uUCAuUGCa--UCG-GCCGCCCUCGCg -3'
miRNA:   3'- gAGUuGCGgccAGCaCGGCGGGAGCG- -5'
12499 5' -60 NC_003324.1 + 21817 0.69 0.344424
Target:  5'- uCUCGuCGCC-GUCGU-CCGCCUUCuGCa -3'
miRNA:   3'- -GAGUuGCGGcCAGCAcGGCGGGAG-CG- -5'
12499 5' -60 NC_003324.1 + 51528 0.69 0.360563
Target:  5'- -aCAugGCCGGUgGcuuggGCUGCCguCUUGCg -3'
miRNA:   3'- gaGUugCGGCCAgCa----CGGCGG--GAGCG- -5'
12499 5' -60 NC_003324.1 + 11736 0.68 0.368827
Target:  5'- uCUCAugGCCcaacguGGUcaaugcCGUGCCcgGCCCggUCGCg -3'
miRNA:   3'- -GAGUugCGG------CCA------GCACGG--CGGG--AGCG- -5'
12499 5' -60 NC_003324.1 + 18143 0.68 0.377221
Target:  5'- uUCGACGCCGGUUucGCCGacaCCg-GCa -3'
miRNA:   3'- gAGUUGCGGCCAGcaCGGCg--GGagCG- -5'
12499 5' -60 NC_003324.1 + 31494 0.68 0.383172
Target:  5'- -aCGGCGCUcuucugcauugaauGGUCGcaguccGCCGUCCUCGUc -3'
miRNA:   3'- gaGUUGCGG--------------CCAGCa-----CGGCGGGAGCG- -5'
12499 5' -60 NC_003324.1 + 18513 0.68 0.403161
Target:  5'- -aCGGCGCgGGUCGgaucaucgGCUuCCUUCGCc -3'
miRNA:   3'- gaGUUGCGgCCAGCa-------CGGcGGGAGCG- -5'
12499 5' -60 NC_003324.1 + 41561 0.68 0.412055
Target:  5'- -gCGGCGCgGGccuguuccUCGcaggugGCCGuCCCUCGCu -3'
miRNA:   3'- gaGUUGCGgCC--------AGCa-----CGGC-GGGAGCG- -5'
12499 5' -60 NC_003324.1 + 9071 0.68 0.412055
Target:  5'- gUCcACGCCacacGGUcaaCGUGCUGCCgaCGCg -3'
miRNA:   3'- gAGuUGCGG----CCA---GCACGGCGGgaGCG- -5'
12499 5' -60 NC_003324.1 + 11268 0.68 0.412055
Target:  5'- aUUuuUGCCGGUCGUGgucauCCGCaCCUCa- -3'
miRNA:   3'- gAGuuGCGGCCAGCAC-----GGCG-GGAGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.