miRNA display CGI


Results 1 - 20 of 45 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12499 5' -60 NC_003324.1 + 1534 0.66 0.507132
Target:  5'- aUCcGCGCCGGauacgUCGcGCCGuuuCCUUUGCg -3'
miRNA:   3'- gAGuUGCGGCC-----AGCaCGGC---GGGAGCG- -5'
12499 5' -60 NC_003324.1 + 3358 0.67 0.467855
Target:  5'- gUUuAUGCCgacGGUUGccGCCGCCCUcCGCu -3'
miRNA:   3'- gAGuUGCGG---CCAGCa-CGGCGGGA-GCG- -5'
12499 5' -60 NC_003324.1 + 5451 0.67 0.454479
Target:  5'- aUCGACGCUGGgucaggcaggcggCGUcGcCCGCCCcaCGCu -3'
miRNA:   3'- gAGUUGCGGCCa------------GCA-C-GGCGGGa-GCG- -5'
12499 5' -60 NC_003324.1 + 6281 0.71 0.258666
Target:  5'- uUCAugGCuucgaCGGUCGcagcaaggGCUGCCuCUCGCa -3'
miRNA:   3'- gAGUugCG-----GCCAGCa-------CGGCGG-GAGCG- -5'
12499 5' -60 NC_003324.1 + 6787 0.68 0.415646
Target:  5'- aUCGAUGUCGGcuUgcccgaacccuacagCGUGCCGCuCCUCGa -3'
miRNA:   3'- gAGUUGCGGCC--A---------------GCACGGCG-GGAGCg -5'
12499 5' -60 NC_003324.1 + 9071 0.68 0.412055
Target:  5'- gUCcACGCCacacGGUcaaCGUGCUGCCgaCGCg -3'
miRNA:   3'- gAGuUGCGG----CCA---GCACGGCGGgaGCG- -5'
12499 5' -60 NC_003324.1 + 11147 0.67 0.467855
Target:  5'- -gCuuCGCCGGUCuG-GCgGCCggCUCGCa -3'
miRNA:   3'- gaGuuGCGGCCAG-CaCGgCGG--GAGCG- -5'
12499 5' -60 NC_003324.1 + 11268 0.68 0.412055
Target:  5'- aUUuuUGCCGGUCGUGgucauCCGCaCCUCa- -3'
miRNA:   3'- gAGuuGCGGCCAGCAC-----GGCG-GGAGcg -5'
12499 5' -60 NC_003324.1 + 11736 0.68 0.368827
Target:  5'- uCUCAugGCCcaacguGGUcaaugcCGUGCCcgGCCCggUCGCg -3'
miRNA:   3'- -GAGUugCGG------CCA------GCACGG--CGGG--AGCG- -5'
12499 5' -60 NC_003324.1 + 17816 0.66 0.477532
Target:  5'- cCUCAcgGCGCgcauuCGGg-GUGUCGCCCUUGa -3'
miRNA:   3'- -GAGU--UGCG-----GCCagCACGGCGGGAGCg -5'
12499 5' -60 NC_003324.1 + 18143 0.68 0.377221
Target:  5'- uUCGACGCCGGUUucGCCGacaCCg-GCa -3'
miRNA:   3'- gAGUUGCGGCCAGcaCGGCg--GGagCG- -5'
12499 5' -60 NC_003324.1 + 18492 0.67 0.43945
Target:  5'- -cCAGCGUCGccuUCGUGUgGuUCCUCGCa -3'
miRNA:   3'- gaGUUGCGGCc--AGCACGgC-GGGAGCG- -5'
12499 5' -60 NC_003324.1 + 18513 0.68 0.403161
Target:  5'- -aCGGCGCgGGUCGgaucaucgGCUuCCUUCGCc -3'
miRNA:   3'- gaGUUGCGgCCAGCa-------CGGcGGGAGCG- -5'
12499 5' -60 NC_003324.1 + 19384 0.71 0.271648
Target:  5'- aUCGACGCCGGcgCGcGUCGCgCCgUGCa -3'
miRNA:   3'- gAGUUGCGGCCa-GCaCGGCG-GGaGCG- -5'
12499 5' -60 NC_003324.1 + 20373 0.67 0.42107
Target:  5'- gCUCuugcuauCGCCGGcCGUGCCGUaUUCGa -3'
miRNA:   3'- -GAGuu-----GCGGCCaGCACGGCGgGAGCg -5'
12499 5' -60 NC_003324.1 + 20601 0.76 0.109684
Target:  5'- aUgGGCGCuugCGGUCGgcggGCaCGCCCUCGCu -3'
miRNA:   3'- gAgUUGCG---GCCAGCa---CG-GCGGGAGCG- -5'
12499 5' -60 NC_003324.1 + 21514 0.71 0.258666
Target:  5'- gCUCAAgGUCGGaCG-GCCGCCacggCGCa -3'
miRNA:   3'- -GAGUUgCGGCCaGCaCGGCGGga--GCG- -5'
12499 5' -60 NC_003324.1 + 21817 0.69 0.344424
Target:  5'- uCUCGuCGCC-GUCGU-CCGCCUUCuGCa -3'
miRNA:   3'- -GAGUuGCGGcCAGCAcGGCGGGAG-CG- -5'
12499 5' -60 NC_003324.1 + 23234 0.67 0.45828
Target:  5'- gUgGGCGCCGGcaagaCGUuuGCCGCCaUUGCa -3'
miRNA:   3'- gAgUUGCGGCCa----GCA--CGGCGGgAGCG- -5'
12499 5' -60 NC_003324.1 + 23405 0.66 0.477532
Target:  5'- gCUCGGCuuucucguugGCCGcGUCgGUGgCGCCCUgGUu -3'
miRNA:   3'- -GAGUUG----------CGGC-CAG-CACgGCGGGAgCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.