miRNA display CGI


Results 21 - 40 of 45 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12499 5' -60 NC_003324.1 + 24834 0.67 0.44881
Target:  5'- aUC-GCGCCgacaaGGUCG-GCCGUCUUgGCa -3'
miRNA:   3'- gAGuUGCGG-----CCAGCaCGGCGGGAgCG- -5'
12499 5' -60 NC_003324.1 + 26331 0.67 0.430202
Target:  5'- uUCAGCGCCGGuUCGaGCaucccgGCCUguuucagcUCGCg -3'
miRNA:   3'- gAGUUGCGGCC-AGCaCGg-----CGGG--------AGCG- -5'
12499 5' -60 NC_003324.1 + 28622 0.74 0.159345
Target:  5'- cCUCGugGcCCGGaUCGUugcggGCCGCCUugUCGCg -3'
miRNA:   3'- -GAGUugC-GGCC-AGCA-----CGGCGGG--AGCG- -5'
12499 5' -60 NC_003324.1 + 30059 0.67 0.45828
Target:  5'- aUCAcgcCGCCGGUCGcgacaccgGCCGCugcggcuuCCUCGa -3'
miRNA:   3'- gAGUu--GCGGCCAGCa-------CGGCG--------GGAGCg -5'
12499 5' -60 NC_003324.1 + 30372 0.67 0.45828
Target:  5'- --uGGCGUCGcccUCGgccaUGCCGCCCUCGa -3'
miRNA:   3'- gagUUGCGGCc--AGC----ACGGCGGGAGCg -5'
12499 5' -60 NC_003324.1 + 30481 0.66 0.507132
Target:  5'- aUCGGCGCCGc-CGaGCagGCCCUCGg -3'
miRNA:   3'- gAGUUGCGGCcaGCaCGg-CGGGAGCg -5'
12499 5' -60 NC_003324.1 + 31494 0.68 0.383172
Target:  5'- -aCGGCGCUcuucugcauugaauGGUCGcaguccGCCGUCCUCGUc -3'
miRNA:   3'- gaGUUGCGG--------------CCAGCa-----CGGCGGGAGCG- -5'
12499 5' -60 NC_003324.1 + 32252 0.74 0.151172
Target:  5'- gUCAGCGCCcccGGUCGUGUCGggaCgCUCGCc -3'
miRNA:   3'- gAGUUGCGG---CCAGCACGGCg--G-GAGCG- -5'
12499 5' -60 NC_003324.1 + 36602 0.67 0.42107
Target:  5'- cCUCA--GCCGGUCuccuauggcUGUCGCCgUCGCc -3'
miRNA:   3'- -GAGUugCGGCCAGc--------ACGGCGGgAGCG- -5'
12499 5' -60 NC_003324.1 + 38099 0.67 0.45828
Target:  5'- gUCGGCGCCGuGcUgGUGaCCGUUCUUGUg -3'
miRNA:   3'- gAGUUGCGGC-C-AgCAC-GGCGGGAGCG- -5'
12499 5' -60 NC_003324.1 + 38244 0.66 0.487307
Target:  5'- uUCAGCGCCGGaa-UGCCGa--UCGCc -3'
miRNA:   3'- gAGUUGCGGCCagcACGGCgggAGCG- -5'
12499 5' -60 NC_003324.1 + 40338 0.66 0.487307
Target:  5'- uUCGGCGCUGcagcaGUCuUGCCGgCUUUCGCu -3'
miRNA:   3'- gAGUUGCGGC-----CAGcACGGC-GGGAGCG- -5'
12499 5' -60 NC_003324.1 + 41561 0.68 0.412055
Target:  5'- -gCGGCGCgGGccuguuccUCGcaggugGCCGuCCCUCGCu -3'
miRNA:   3'- gaGUUGCGgCC--------AGCa-----CGGC-GGGAGCG- -5'
12499 5' -60 NC_003324.1 + 47653 0.66 0.487307
Target:  5'- gCUCGACGgCgagGGUCGauCgGCCCUCGUc -3'
miRNA:   3'- -GAGUUGCgG---CCAGCacGgCGGGAGCG- -5'
12499 5' -60 NC_003324.1 + 49006 0.7 0.306386
Target:  5'- uUCAuUGCa--UCG-GCCGCCCUCGCg -3'
miRNA:   3'- gAGUuGCGgccAGCaCGGCGGGAGCG- -5'
12499 5' -60 NC_003324.1 + 49602 0.67 0.430202
Target:  5'- cCUCGcCGCucgauaCGGcCGagagugccagaaUGCCGCCCUCGUu -3'
miRNA:   3'- -GAGUuGCG------GCCaGC------------ACGGCGGGAGCG- -5'
12499 5' -60 NC_003324.1 + 49896 0.76 0.115769
Target:  5'- aUCGcuGCGUCGGcgcgcUCGUGCuCGCCUUCGCu -3'
miRNA:   3'- gAGU--UGCGGCC-----AGCACG-GCGGGAGCG- -5'
12499 5' -60 NC_003324.1 + 50431 0.66 0.497175
Target:  5'- --aGGCGCUGGgCGUGgUGCagCUCGCa -3'
miRNA:   3'- gagUUGCGGCCaGCACgGCGg-GAGCG- -5'
12499 5' -60 NC_003324.1 + 50673 0.66 0.497175
Target:  5'- gUCGAgGgCGG-CGUGCCaGCCCUUu- -3'
miRNA:   3'- gAGUUgCgGCCaGCACGG-CGGGAGcg -5'
12499 5' -60 NC_003324.1 + 51528 0.69 0.360563
Target:  5'- -aCAugGCCGGUgGcuuggGCUGCCguCUUGCg -3'
miRNA:   3'- gaGUugCGGCCAgCa----CGGCGG--GAGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.