miRNA display CGI


Results 21 - 40 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12499 5' -60 NC_003324.1 + 21514 0.71 0.258666
Target:  5'- gCUCAAgGUCGGaCG-GCCGCCacggCGCa -3'
miRNA:   3'- -GAGUUgCGGCCaGCaCGGCGGga--GCG- -5'
12499 5' -60 NC_003324.1 + 19384 0.71 0.271648
Target:  5'- aUCGACGCCGGcgCGcGUCGCgCCgUGCa -3'
miRNA:   3'- gAGUUGCGGCCa-GCaCGGCG-GGaGCG- -5'
12499 5' -60 NC_003324.1 + 49006 0.7 0.306386
Target:  5'- uUCAuUGCa--UCG-GCCGCCCUCGCg -3'
miRNA:   3'- gAGUuGCGgccAGCaCGGCGGGAGCG- -5'
12499 5' -60 NC_003324.1 + 21817 0.69 0.344424
Target:  5'- uCUCGuCGCC-GUCGU-CCGCCUUCuGCa -3'
miRNA:   3'- -GAGUuGCGGcCAGCAcGGCGGGAG-CG- -5'
12499 5' -60 NC_003324.1 + 41561 0.68 0.412055
Target:  5'- -gCGGCGCgGGccuguuccUCGcaggugGCCGuCCCUCGCu -3'
miRNA:   3'- gaGUUGCGgCC--------AGCa-----CGGC-GGGAGCG- -5'
12499 5' -60 NC_003324.1 + 18513 0.68 0.403161
Target:  5'- -aCGGCGCgGGUCGgaucaucgGCUuCCUUCGCc -3'
miRNA:   3'- gaGUUGCGgCCAGCa-------CGGcGGGAGCG- -5'
12499 5' -60 NC_003324.1 + 31494 0.68 0.383172
Target:  5'- -aCGGCGCUcuucugcauugaauGGUCGcaguccGCCGUCCUCGUc -3'
miRNA:   3'- gaGUUGCGG--------------CCAGCa-----CGGCGGGAGCG- -5'
12499 5' -60 NC_003324.1 + 18143 0.68 0.377221
Target:  5'- uUCGACGCCGGUUucGCCGacaCCg-GCa -3'
miRNA:   3'- gAGUUGCGGCCAGcaCGGCg--GGagCG- -5'
12499 5' -60 NC_003324.1 + 11736 0.68 0.368827
Target:  5'- uCUCAugGCCcaacguGGUcaaugcCGUGCCcgGCCCggUCGCg -3'
miRNA:   3'- -GAGUugCGG------CCA------GCACGG--CGGG--AGCG- -5'
12499 5' -60 NC_003324.1 + 51528 0.69 0.360563
Target:  5'- -aCAugGCCGGUgGcuuggGCUGCCguCUUGCg -3'
miRNA:   3'- gaGUugCGGCCAgCa----CGGCGG--GAGCG- -5'
12499 5' -60 NC_003324.1 + 11268 0.68 0.412055
Target:  5'- aUUuuUGCCGGUCGUGgucauCCGCaCCUCa- -3'
miRNA:   3'- gAGuuGCGGCCAGCAC-----GGCG-GGAGcg -5'
12499 5' -60 NC_003324.1 + 36602 0.67 0.42107
Target:  5'- cCUCA--GCCGGUCuccuauggcUGUCGCCgUCGCc -3'
miRNA:   3'- -GAGUugCGGCCAGc--------ACGGCGGgAGCG- -5'
12499 5' -60 NC_003324.1 + 49602 0.67 0.430202
Target:  5'- cCUCGcCGCucgauaCGGcCGagagugccagaaUGCCGCCCUCGUu -3'
miRNA:   3'- -GAGUuGCG------GCCaGC------------ACGGCGGGAGCG- -5'
12499 5' -60 NC_003324.1 + 18492 0.67 0.43945
Target:  5'- -cCAGCGUCGccuUCGUGUgGuUCCUCGCa -3'
miRNA:   3'- gaGUUGCGGCc--AGCACGgC-GGGAGCG- -5'
12499 5' -60 NC_003324.1 + 54150 0.67 0.44881
Target:  5'- gUCGA-GCCGGUCG-GCCGauuCCgcCGCa -3'
miRNA:   3'- gAGUUgCGGCCAGCaCGGCg--GGa-GCG- -5'
12499 5' -60 NC_003324.1 + 23234 0.67 0.45828
Target:  5'- gUgGGCGCCGGcaagaCGUuuGCCGCCaUUGCa -3'
miRNA:   3'- gAgUUGCGGCCa----GCA--CGGCGGgAGCG- -5'
12499 5' -60 NC_003324.1 + 3358 0.67 0.467855
Target:  5'- gUUuAUGCCgacGGUUGccGCCGCCCUcCGCu -3'
miRNA:   3'- gAGuUGCGG---CCAGCa-CGGCGGGA-GCG- -5'
12499 5' -60 NC_003324.1 + 47653 0.66 0.487307
Target:  5'- gCUCGACGgCgagGGUCGauCgGCCCUCGUc -3'
miRNA:   3'- -GAGUUGCgG---CCAGCacGgCGGGAGCG- -5'
12499 5' -60 NC_003324.1 + 50673 0.66 0.497175
Target:  5'- gUCGAgGgCGG-CGUGCCaGCCCUUu- -3'
miRNA:   3'- gAGUUgCgGCCaGCACGG-CGGGAGcg -5'
12499 5' -60 NC_003324.1 + 20601 0.76 0.109684
Target:  5'- aUgGGCGCuugCGGUCGgcggGCaCGCCCUCGCu -3'
miRNA:   3'- gAgUUGCG---GCCAGCa---CG-GCGGGAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.