Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12499 | 5' | -60 | NC_003324.1 | + | 57287 | 1.1 | 0.000365 |
Target: 5'- gCUCAACGCCGGUCGUGCCGCCCUCGCc -3' miRNA: 3'- -GAGUUGCGGCCAGCACGGCGGGAGCG- -5' |
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12499 | 5' | -60 | NC_003324.1 | + | 55497 | 0.67 | 0.42107 |
Target: 5'- uUCcACGCCGGgcaggagCcUGCCGgCCUCGa -3' miRNA: 3'- gAGuUGCGGCCa------GcACGGCgGGAGCg -5' |
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12499 | 5' | -60 | NC_003324.1 | + | 54594 | 0.75 | 0.135961 |
Target: 5'- --gAACGCCGGUCGcGCUGCaggCUUCGCg -3' miRNA: 3'- gagUUGCGGCCAGCaCGGCG---GGAGCG- -5' |
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12499 | 5' | -60 | NC_003324.1 | + | 54334 | 0.73 | 0.176894 |
Target: 5'- --uGAUGCCGGUCcauggcaaccgGUGCCGCgCCUuCGCu -3' miRNA: 3'- gagUUGCGGCCAG-----------CACGGCG-GGA-GCG- -5' |
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12499 | 5' | -60 | NC_003324.1 | + | 54150 | 0.67 | 0.44881 |
Target: 5'- gUCGA-GCCGGUCG-GCCGauuCCgcCGCa -3' miRNA: 3'- gAGUUgCGGCCAGCaCGGCg--GGa-GCG- -5' |
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12499 | 5' | -60 | NC_003324.1 | + | 51528 | 0.69 | 0.360563 |
Target: 5'- -aCAugGCCGGUgGcuuggGCUGCCguCUUGCg -3' miRNA: 3'- gaGUugCGGCCAgCa----CGGCGG--GAGCG- -5' |
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12499 | 5' | -60 | NC_003324.1 | + | 50673 | 0.66 | 0.497175 |
Target: 5'- gUCGAgGgCGG-CGUGCCaGCCCUUu- -3' miRNA: 3'- gAGUUgCgGCCaGCACGG-CGGGAGcg -5' |
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12499 | 5' | -60 | NC_003324.1 | + | 50431 | 0.66 | 0.497175 |
Target: 5'- --aGGCGCUGGgCGUGgUGCagCUCGCa -3' miRNA: 3'- gagUUGCGGCCaGCACgGCGg-GAGCG- -5' |
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12499 | 5' | -60 | NC_003324.1 | + | 49896 | 0.76 | 0.115769 |
Target: 5'- aUCGcuGCGUCGGcgcgcUCGUGCuCGCCUUCGCu -3' miRNA: 3'- gAGU--UGCGGCC-----AGCACG-GCGGGAGCG- -5' |
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12499 | 5' | -60 | NC_003324.1 | + | 49602 | 0.67 | 0.430202 |
Target: 5'- cCUCGcCGCucgauaCGGcCGagagugccagaaUGCCGCCCUCGUu -3' miRNA: 3'- -GAGUuGCG------GCCaGC------------ACGGCGGGAGCG- -5' |
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12499 | 5' | -60 | NC_003324.1 | + | 49006 | 0.7 | 0.306386 |
Target: 5'- uUCAuUGCa--UCG-GCCGCCCUCGCg -3' miRNA: 3'- gAGUuGCGgccAGCaCGGCGGGAGCG- -5' |
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12499 | 5' | -60 | NC_003324.1 | + | 47653 | 0.66 | 0.487307 |
Target: 5'- gCUCGACGgCgagGGUCGauCgGCCCUCGUc -3' miRNA: 3'- -GAGUUGCgG---CCAGCacGgCGGGAGCG- -5' |
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12499 | 5' | -60 | NC_003324.1 | + | 41561 | 0.68 | 0.412055 |
Target: 5'- -gCGGCGCgGGccuguuccUCGcaggugGCCGuCCCUCGCu -3' miRNA: 3'- gaGUUGCGgCC--------AGCa-----CGGC-GGGAGCG- -5' |
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12499 | 5' | -60 | NC_003324.1 | + | 40338 | 0.66 | 0.487307 |
Target: 5'- uUCGGCGCUGcagcaGUCuUGCCGgCUUUCGCu -3' miRNA: 3'- gAGUUGCGGC-----CAGcACGGC-GGGAGCG- -5' |
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12499 | 5' | -60 | NC_003324.1 | + | 38244 | 0.66 | 0.487307 |
Target: 5'- uUCAGCGCCGGaa-UGCCGa--UCGCc -3' miRNA: 3'- gAGUUGCGGCCagcACGGCgggAGCG- -5' |
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12499 | 5' | -60 | NC_003324.1 | + | 38099 | 0.67 | 0.45828 |
Target: 5'- gUCGGCGCCGuGcUgGUGaCCGUUCUUGUg -3' miRNA: 3'- gAGUUGCGGC-C-AgCAC-GGCGGGAGCG- -5' |
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12499 | 5' | -60 | NC_003324.1 | + | 36602 | 0.67 | 0.42107 |
Target: 5'- cCUCA--GCCGGUCuccuauggcUGUCGCCgUCGCc -3' miRNA: 3'- -GAGUugCGGCCAGc--------ACGGCGGgAGCG- -5' |
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12499 | 5' | -60 | NC_003324.1 | + | 32252 | 0.74 | 0.151172 |
Target: 5'- gUCAGCGCCcccGGUCGUGUCGggaCgCUCGCc -3' miRNA: 3'- gAGUUGCGG---CCAGCACGGCg--G-GAGCG- -5' |
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12499 | 5' | -60 | NC_003324.1 | + | 31494 | 0.68 | 0.383172 |
Target: 5'- -aCGGCGCUcuucugcauugaauGGUCGcaguccGCCGUCCUCGUc -3' miRNA: 3'- gaGUUGCGG--------------CCAGCa-----CGGCGGGAGCG- -5' |
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12499 | 5' | -60 | NC_003324.1 | + | 30481 | 0.66 | 0.507132 |
Target: 5'- aUCGGCGCCGc-CGaGCagGCCCUCGg -3' miRNA: 3'- gAGUUGCGGCcaGCaCGg-CGGGAGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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