Results 21 - 33 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12508 | 3' | -55.9 | NC_003345.1 | + | 683 | 0.7 | 0.582925 |
Target: 5'- -gGGGCCgaccgccccgguuaACAUcaaACCGGGGcgGGCCGCUu -3' miRNA: 3'- agCCCGGa-------------UGUA---UGGCCCU--UUGGCGG- -5' |
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12508 | 3' | -55.9 | NC_003345.1 | + | 10560 | 0.71 | 0.486574 |
Target: 5'- aCGGGCCgACcgggAUUGGGAAGUCGCCc -3' miRNA: 3'- aGCCCGGaUGua--UGGCCCUUUGGCGG- -5' |
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12508 | 3' | -55.9 | NC_003345.1 | + | 62952 | 0.71 | 0.496502 |
Target: 5'- cCGGGUCgag--GCCGGGAAcAgCGCCg -3' miRNA: 3'- aGCCCGGauguaUGGCCCUU-UgGCGG- -5' |
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12508 | 3' | -55.9 | NC_003345.1 | + | 33115 | 0.71 | 0.486574 |
Target: 5'- -gGGGCCUACGUGuucCCGGcGuucAACgGCCu -3' miRNA: 3'- agCCCGGAUGUAU---GGCC-Cu--UUGgCGG- -5' |
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12508 | 3' | -55.9 | NC_003345.1 | + | 69115 | 0.72 | 0.429146 |
Target: 5'- aCGGGUCguu---CCGGGGAACuCGCCc -3' miRNA: 3'- aGCCCGGauguauGGCCCUUUG-GCGG- -5' |
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12508 | 3' | -55.9 | NC_003345.1 | + | 33059 | 0.72 | 0.447855 |
Target: 5'- cCGaGGgCUAC--GCCGGGccGACCGCCa -3' miRNA: 3'- aGC-CCgGAUGuaUGGCCCu-UUGGCGG- -5' |
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12508 | 3' | -55.9 | NC_003345.1 | + | 25037 | 0.73 | 0.401967 |
Target: 5'- aCGGGCCUuCGUAgCGGGAGAUUagGUCu -3' miRNA: 3'- aGCCCGGAuGUAUgGCCCUUUGG--CGG- -5' |
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12508 | 3' | -55.9 | NC_003345.1 | + | 41969 | 0.74 | 0.342979 |
Target: 5'- -gGGGCCUACG-ACUuuuGGGAAGCCaGCUa -3' miRNA: 3'- agCCCGGAUGUaUGG---CCCUUUGG-CGG- -5' |
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12508 | 3' | -55.9 | NC_003345.1 | + | 1153 | 0.74 | 0.335079 |
Target: 5'- aCGGGCCUAUGUgguuuaggGCCGGuucGGGCCGCUu -3' miRNA: 3'- aGCCCGGAUGUA--------UGGCCc--UUUGGCGG- -5' |
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12508 | 3' | -55.9 | NC_003345.1 | + | 1369 | 0.74 | 0.35918 |
Target: 5'- uUCGGGCCguacuucaaACGUaacACCGGGAAACaCGUUc -3' miRNA: 3'- -AGCCCGGa--------UGUA---UGGCCCUUUG-GCGG- -5' |
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12508 | 3' | -55.9 | NC_003345.1 | + | 75320 | 0.76 | 0.276698 |
Target: 5'- cUCGcGGCCccgguUAC--GCCGGGGAACCGCa -3' miRNA: 3'- -AGC-CCGG-----AUGuaUGGCCCUUUGGCGg -5' |
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12508 | 3' | -55.9 | NC_003345.1 | + | 32454 | 0.78 | 0.199536 |
Target: 5'- aCGGGCCUGucCGUACuCGGGGAAuccuUCGCCc -3' miRNA: 3'- aGCCCGGAU--GUAUG-GCCCUUU----GGCGG- -5' |
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12508 | 3' | -55.9 | NC_003345.1 | + | 1418 | 1.11 | 0.001036 |
Target: 5'- uUCGGGCCUACAUACCGGGAAACCGCCc -3' miRNA: 3'- -AGCCCGGAUGUAUGGCCCUUUGGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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