Results 21 - 33 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12508 | 3' | -55.9 | NC_003345.1 | + | 55467 | 0.68 | 0.674025 |
Target: 5'- uUCGGGCCgg-AUGCCGuaguaGAAuagacacuaccACCGCCa -3' miRNA: 3'- -AGCCCGGaugUAUGGCc----CUU-----------UGGCGG- -5' |
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12508 | 3' | -55.9 | NC_003345.1 | + | 29820 | 0.67 | 0.705462 |
Target: 5'- cUCGGucGUCUACuGUACCGGGugcGCC-CCg -3' miRNA: 3'- -AGCC--CGGAUG-UAUGGCCCuu-UGGcGG- -5' |
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12508 | 3' | -55.9 | NC_003345.1 | + | 32803 | 0.67 | 0.705462 |
Target: 5'- gUCGGGCCgcCGUaGCCGGuGuagguGuuGCCg -3' miRNA: 3'- -AGCCCGGauGUA-UGGCC-Cuu---UggCGG- -5' |
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12508 | 3' | -55.9 | NC_003345.1 | + | 17617 | 0.67 | 0.715821 |
Target: 5'- aCGGaGCCaGCGgGCCGuaGAACCGCUc -3' miRNA: 3'- aGCC-CGGaUGUaUGGCccUUUGGCGG- -5' |
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12508 | 3' | -55.9 | NC_003345.1 | + | 24582 | 0.67 | 0.715821 |
Target: 5'- cUC-GGCg-GCAggacGCCGGGAggUCGCCc -3' miRNA: 3'- -AGcCCGgaUGUa---UGGCCCUuuGGCGG- -5' |
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12508 | 3' | -55.9 | NC_003345.1 | + | 829 | 0.67 | 0.715821 |
Target: 5'- aCGGGCCg----ACCGGGGAgacggaACCGg- -3' miRNA: 3'- aGCCCGGauguaUGGCCCUU------UGGCgg -5' |
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12508 | 3' | -55.9 | NC_003345.1 | + | 31411 | 0.67 | 0.726103 |
Target: 5'- gUCGGGUugCUACGUucccCCGG--AAUCGCCa -3' miRNA: 3'- -AGCCCG--GAUGUAu---GGCCcuUUGGCGG- -5' |
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12508 | 3' | -55.9 | NC_003345.1 | + | 73515 | 0.67 | 0.736297 |
Target: 5'- gCGGGCCUuCAUGCuCGaaGAccacAAUCGCCg -3' miRNA: 3'- aGCCCGGAuGUAUG-GCc-CU----UUGGCGG- -5' |
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12508 | 3' | -55.9 | NC_003345.1 | + | 42651 | 0.67 | 0.756384 |
Target: 5'- gCGGGUCggggACGUuccUCGuGGAAGCCGUa -3' miRNA: 3'- aGCCCGGa---UGUAu--GGC-CCUUUGGCGg -5' |
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12508 | 3' | -55.9 | NC_003345.1 | + | 46153 | 0.66 | 0.775998 |
Target: 5'- -aGGaGuCCUGCGUGCCGuaGGGGA-CGCCc -3' miRNA: 3'- agCC-C-GGAUGUAUGGC--CCUUUgGCGG- -5' |
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12508 | 3' | -55.9 | NC_003345.1 | + | 72168 | 0.66 | 0.775998 |
Target: 5'- cCGGGCgUAgucaaacucCAUAUCGcGGAGcauauCCGCCu -3' miRNA: 3'- aGCCCGgAU---------GUAUGGC-CCUUu----GGCGG- -5' |
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12508 | 3' | -55.9 | NC_003345.1 | + | 42420 | 0.66 | 0.795057 |
Target: 5'- aCGGGUCauuUGCu--CCGcGAAGCCGUCa -3' miRNA: 3'- aGCCCGG---AUGuauGGCcCUUUGGCGG- -5' |
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12508 | 3' | -55.9 | NC_003345.1 | + | 62948 | 0.66 | 0.798796 |
Target: 5'- -gGGGCCUACGcuggccuCCGGGcgAAGCucgguaucacgaccaCGCCa -3' miRNA: 3'- agCCCGGAUGUau-----GGCCC--UUUG---------------GCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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