miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1251 5' -56.3 NC_001317.1 + 19095 0.66 0.418355
Target:  5'- aUCcAGCCGCCGGUgAUGGCugGGUa--- -3'
miRNA:   3'- gAGuUCGGCGGUCG-UACCG--CCGaaaa -5'
1251 5' -56.3 NC_001317.1 + 10530 0.7 0.242487
Target:  5'- gCUCAGGCUGCaaauCAUGGUGGCg--- -3'
miRNA:   3'- -GAGUUCGGCGguc-GUACCGCCGaaaa -5'
1251 5' -56.3 NC_001317.1 + 7144 0.68 0.308346
Target:  5'- cCUCAAcGCCGCgauagcgcucauaCAGgGUGGCGGUUg-- -3'
miRNA:   3'- -GAGUU-CGGCG-------------GUCgUACCGCCGAaaa -5'
1251 5' -56.3 NC_001317.1 + 6633 0.66 0.418355
Target:  5'- gCUUu-GCUGCCGGUuUGGUGGCa--- -3'
miRNA:   3'- -GAGuuCGGCGGUCGuACCGCCGaaaa -5'
1251 5' -56.3 NC_001317.1 + 4431 0.73 0.136645
Target:  5'- uUCcAGUUcgGCCAGCGUGGCGGCg--- -3'
miRNA:   3'- gAGuUCGG--CGGUCGUACCGCCGaaaa -5'
1251 5' -56.3 NC_001317.1 + 2475 0.71 0.188227
Target:  5'- gCUCGcGCCGCCGGUGguuucUGGUGGCa--- -3'
miRNA:   3'- -GAGUuCGGCGGUCGU-----ACCGCCGaaaa -5'
1251 5' -56.3 NC_001317.1 + 1099 0.67 0.370079
Target:  5'- -aCGAGCCGCCGGuCAgcuucuccgGGCuGGCa--- -3'
miRNA:   3'- gaGUUCGGCGGUC-GUa--------CCG-CCGaaaa -5'
1251 5' -56.3 NC_001317.1 + 221 1.04 0.000542
Target:  5'- uCUCAAGCCGCCAGCAUGGCGGCUUUUu -3'
miRNA:   3'- -GAGUUCGGCGGUCGUACCGCCGAAAA- -5'
1251 5' -56.3 NC_001317.1 + 166 0.77 0.068217
Target:  5'- --aAAGCCGCCAuGC-UGGCGGCUUg- -3'
miRNA:   3'- gagUUCGGCGGU-CGuACCGCCGAAaa -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.