miRNA display CGI


Results 21 - 25 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12512 3' -54.4 NC_003345.1 + 19755 0.72 0.487856
Target:  5'- -cCUUGAGCCGCGCC-AGcGGCGGUUa -3'
miRNA:   3'- cuGAACUCGGUGUGGcUCuCUGUCGG- -5'
12512 3' -54.4 NC_003345.1 + 59036 0.74 0.401338
Target:  5'- cGACaaaGAGCUACgACgCGAGGGACAGCa -3'
miRNA:   3'- -CUGaa-CUCGGUG-UG-GCUCUCUGUCGg -5'
12512 3' -54.4 NC_003345.1 + 4904 0.74 0.401338
Target:  5'- cGACgaGAGCgAUACCGAGAGuggaaGCGGCg -3'
miRNA:   3'- -CUGaaCUCGgUGUGGCUCUC-----UGUCGg -5'
12512 3' -54.4 NC_003345.1 + 34391 0.76 0.317463
Target:  5'- uGACgUUGAcGCCGCgAUUGAGGGACAGUCg -3'
miRNA:   3'- -CUG-AACU-CGGUG-UGGCUCUCUGUCGG- -5'
12512 3' -54.4 NC_003345.1 + 7064 1.11 0.001209
Target:  5'- gGACUUGAGCCACACCGAGAGACAGCCu -3'
miRNA:   3'- -CUGAACUCGGUGUGGCUCUCUGUCGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.