miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1252 3' -61 NC_001317.1 + 446 1.07 0.000167
Target:  5'- aAGCCAGCGCCGCCGACCUGAUGGACGc -3'
miRNA:   3'- -UCGGUCGCGGCGGCUGGACUACCUGC- -5'
1252 3' -61 NC_001317.1 + 2095 0.67 0.239869
Target:  5'- aAGCCAGUcaCGCCGAUaUUGcAUGGGCGa -3'
miRNA:   3'- -UCGGUCGcgGCGGCUG-GAC-UACCUGC- -5'
1252 3' -61 NC_001317.1 + 2476 0.7 0.155848
Target:  5'- uGCUcGCGCCGCCGGugguuUCUGGUGG-Ca -3'
miRNA:   3'- uCGGuCGCGGCGGCU-----GGACUACCuGc -5'
1252 3' -61 NC_001317.1 + 2612 0.68 0.199204
Target:  5'- gAGCugCAGCGCUGCaugguCGACgUGAUGGAa- -3'
miRNA:   3'- -UCG--GUCGCGGCG-----GCUGgACUACCUgc -5'
1252 3' -61 NC_001317.1 + 5577 0.67 0.252698
Target:  5'- cGGCCAGCaGCUuaCGGCCaacGAUGGcaACGa -3'
miRNA:   3'- -UCGGUCG-CGGcgGCUGGa--CUACC--UGC- -5'
1252 3' -61 NC_001317.1 + 14699 0.66 0.294575
Target:  5'- cAGCCAGCGCgaGCUgauggucaucuGGCCUGAUuuccucgcaugGGAUa -3'
miRNA:   3'- -UCGGUCGCGg-CGG-----------CUGGACUA-----------CCUGc -5'
1252 3' -61 NC_001317.1 + 16290 0.68 0.193911
Target:  5'- cGGCCuGuCGaCCGauGACCUGAUGG-CGg -3'
miRNA:   3'- -UCGGuC-GC-GGCggCUGGACUACCuGC- -5'
1252 3' -61 NC_001317.1 + 16781 0.69 0.160208
Target:  5'- cGCCAGCGCU-CCGAgCUGAUGcaGGCc -3'
miRNA:   3'- uCGGUCGCGGcGGCUgGACUAC--CUGc -5'
1252 3' -61 NC_001317.1 + 17302 0.69 0.173954
Target:  5'- --gCAGCGCUGCUGACCg---GGAUGa -3'
miRNA:   3'- ucgGUCGCGGCGGCUGGacuaCCUGC- -5'
1252 3' -61 NC_001317.1 + 24061 0.66 0.266086
Target:  5'- uGCCAGCGCuUGCCGuccuuACCUGcgauccagccGUGGcCGu -3'
miRNA:   3'- uCGGUCGCG-GCGGC-----UGGAC----------UACCuGC- -5'
1252 3' -61 NC_001317.1 + 28762 0.69 0.164677
Target:  5'- cAGCCGGgGCgaaGCCcugcACCUGAUGGcCGg -3'
miRNA:   3'- -UCGGUCgCGg--CGGc---UGGACUACCuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.