miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12526 3' -55 NC_003345.1 + 16977 1.13 0.000963
Target:  5'- cGACCCGAACGAGAGGAACAGCACGCCg -3'
miRNA:   3'- -CUGGGCUUGCUCUCCUUGUCGUGCGG- -5'
12526 3' -55 NC_003345.1 + 75740 0.81 0.138289
Target:  5'- aGACCgCGAGCGcGAcGGAACAGCuCGCCg -3'
miRNA:   3'- -CUGG-GCUUGCuCU-CCUUGUCGuGCGG- -5'
12526 3' -55 NC_003345.1 + 69455 0.75 0.353471
Target:  5'- cACCCGAcgcCGAG-GGAGCAGUcugcgucACGCCg -3'
miRNA:   3'- cUGGGCUu--GCUCuCCUUGUCG-------UGCGG- -5'
12526 3' -55 NC_003345.1 + 77437 0.74 0.36259
Target:  5'- aGCCCGAGCGAcGGGGGACAGgggacggGgGCCg -3'
miRNA:   3'- cUGGGCUUGCU-CUCCUUGUCg------UgCGG- -5'
12526 3' -55 NC_003345.1 + 150 0.74 0.36259
Target:  5'- aGCCCGAGCGAcGGGGGACAGgggacggGgGCCg -3'
miRNA:   3'- cUGGGCUUGCU-CUCCUUGUCg------UgCGG- -5'
12526 3' -55 NC_003345.1 + 64393 0.74 0.388278
Target:  5'- cGGCCCGAACGGGGGcGACA--ACGCUg -3'
miRNA:   3'- -CUGGGCUUGCUCUCcUUGUcgUGCGG- -5'
12526 3' -55 NC_003345.1 + 48699 0.73 0.424334
Target:  5'- -uCCagaGAACG-GAGuGAACGGCugGCCg -3'
miRNA:   3'- cuGGg--CUUGCuCUC-CUUGUCGugCGG- -5'
12526 3' -55 NC_003345.1 + 71140 0.73 0.452651
Target:  5'- cACCCGuAGCGAGAGucGCAGUcguaauCGCCg -3'
miRNA:   3'- cUGGGC-UUGCUCUCcuUGUCGu-----GCGG- -5'
12526 3' -55 NC_003345.1 + 15101 0.72 0.478994
Target:  5'- uGGCUCGcGGCGgucgaaagaaucgaGGGGGAugAGUACGCCg -3'
miRNA:   3'- -CUGGGC-UUGC--------------UCUCCUugUCGUGCGG- -5'
12526 3' -55 NC_003345.1 + 30684 0.72 0.491944
Target:  5'- cGACUCGGAacCGAGAGGGaacGCGGUcgggcuugACGCCc -3'
miRNA:   3'- -CUGGGCUU--GCUCUCCU---UGUCG--------UGCGG- -5'
12526 3' -55 NC_003345.1 + 77592 0.72 0.502014
Target:  5'- cGGCCCGcGCGGGgcAGGGGCAGgG-GCCg -3'
miRNA:   3'- -CUGGGCuUGCUC--UCCUUGUCgUgCGG- -5'
12526 3' -55 NC_003345.1 + 305 0.72 0.502014
Target:  5'- cGGCCCGcGCGGGgcAGGGGCAGgG-GCCg -3'
miRNA:   3'- -CUGGGCuUGCUC--UCCUUGUCgUgCGG- -5'
12526 3' -55 NC_003345.1 + 9623 0.71 0.56411
Target:  5'- cGACCCGGACGGaacaccguucGAGGuaauCAGCccacgaguCGCCg -3'
miRNA:   3'- -CUGGGCUUGCU----------CUCCuu--GUCGu-------GCGG- -5'
12526 3' -55 NC_003345.1 + 1284 0.71 0.568332
Target:  5'- cGGCCCGAACGGGAaaccccgcgaaagcgGGGGCGGUuucccgguauguAgGCCc -3'
miRNA:   3'- -CUGGGCUUGCUCU---------------CCUUGUCG------------UgCGG- -5'
12526 3' -55 NC_003345.1 + 5908 0.7 0.573621
Target:  5'- --aCCGAcgACGAGcGGGACAGCAUcgagaaaGCCg -3'
miRNA:   3'- cugGGCU--UGCUCuCCUUGUCGUG-------CGG- -5'
12526 3' -55 NC_003345.1 + 6266 0.7 0.574681
Target:  5'- -uCCCGAGgGAaguGGGAGaugaAGCACGCCu -3'
miRNA:   3'- cuGGGCUUgCUc--UCCUUg---UCGUGCGG- -5'
12526 3' -55 NC_003345.1 + 72889 0.7 0.617332
Target:  5'- uGACCCucccGACGAGGGcGAGCGGauggacuuCGCCg -3'
miRNA:   3'- -CUGGGc---UUGCUCUC-CUUGUCgu------GCGG- -5'
12526 3' -55 NC_003345.1 + 36324 0.7 0.617332
Target:  5'- uGACCCGAuagagacgGCGA-AGGAAUGGCuCGCUc -3'
miRNA:   3'- -CUGGGCU--------UGCUcUCCUUGUCGuGCGG- -5'
12526 3' -55 NC_003345.1 + 59028 0.69 0.638765
Target:  5'- aGCUacGACGcGAGGGACAGCAaUGCCg -3'
miRNA:   3'- cUGGgcUUGCuCUCCUUGUCGU-GCGG- -5'
12526 3' -55 NC_003345.1 + 32596 0.69 0.660175
Target:  5'- cGACCuCGugguUGGGuGGAACAGCaacggguucgacACGCCg -3'
miRNA:   3'- -CUGG-GCuu--GCUCuCCUUGUCG------------UGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.