miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12526 3' -55 NC_003345.1 + 150 0.74 0.36259
Target:  5'- aGCCCGAGCGAcGGGGGACAGgggacggGgGCCg -3'
miRNA:   3'- cUGGGCUUGCU-CUCCUUGUCg------UgCGG- -5'
12526 3' -55 NC_003345.1 + 305 0.72 0.502014
Target:  5'- cGGCCCGcGCGGGgcAGGGGCAGgG-GCCg -3'
miRNA:   3'- -CUGGGCuUGCUC--UCCUUGUCgUgCGG- -5'
12526 3' -55 NC_003345.1 + 765 0.67 0.793269
Target:  5'- -cCCCGAACGGucGGGGGCggguaAGUACGUCu -3'
miRNA:   3'- cuGGGCUUGCUc-UCCUUG-----UCGUGCGG- -5'
12526 3' -55 NC_003345.1 + 1284 0.71 0.568332
Target:  5'- cGGCCCGAACGGGAaaccccgcgaaagcgGGGGCGGUuucccgguauguAgGCCc -3'
miRNA:   3'- -CUGGGCUUGCUCU---------------CCUUGUCG------------UgCGG- -5'
12526 3' -55 NC_003345.1 + 5908 0.7 0.573621
Target:  5'- --aCCGAcgACGAGcGGGACAGCAUcgagaaaGCCg -3'
miRNA:   3'- cugGGCU--UGCUCuCCUUGUCGUG-------CGG- -5'
12526 3' -55 NC_003345.1 + 6266 0.7 0.574681
Target:  5'- -uCCCGAGgGAaguGGGAGaugaAGCACGCCu -3'
miRNA:   3'- cuGGGCUUgCUc--UCCUUg---UCGUGCGG- -5'
12526 3' -55 NC_003345.1 + 9623 0.71 0.56411
Target:  5'- cGACCCGGACGGaacaccguucGAGGuaauCAGCccacgaguCGCCg -3'
miRNA:   3'- -CUGGGCUUGCU----------CUCCuu--GUCGu-------GCGG- -5'
12526 3' -55 NC_003345.1 + 14275 0.67 0.793269
Target:  5'- -cCCCGAcgaguACGGGAGuGGCuGGUACGCUg -3'
miRNA:   3'- cuGGGCU-----UGCUCUCcUUG-UCGUGCGG- -5'
12526 3' -55 NC_003345.1 + 15101 0.72 0.478994
Target:  5'- uGGCUCGcGGCGgucgaaagaaucgaGGGGGAugAGUACGCCg -3'
miRNA:   3'- -CUGGGC-UUGC--------------UCUCCUugUCGUGCGG- -5'
12526 3' -55 NC_003345.1 + 16977 1.13 0.000963
Target:  5'- cGACCCGAACGAGAGGAACAGCACGCCg -3'
miRNA:   3'- -CUGGGCUUGCUCUCCUUGUCGUGCGG- -5'
12526 3' -55 NC_003345.1 + 21807 0.66 0.829868
Target:  5'- --aCCGAGCGAGccgcuGGAGCcGCugaacCGCCc -3'
miRNA:   3'- cugGGCUUGCUCu----CCUUGuCGu----GCGG- -5'
12526 3' -55 NC_003345.1 + 26710 0.66 0.838548
Target:  5'- cGACCCGAagGCGGcGGGucgAGUugACGCCa -3'
miRNA:   3'- -CUGGGCU--UGCUcUCCuugUCG--UGCGG- -5'
12526 3' -55 NC_003345.1 + 28024 0.66 0.829868
Target:  5'- ---aCGAACGAcGGGGAGCuuCACGCg -3'
miRNA:   3'- cuggGCUUGCU-CUCCUUGucGUGCGg -5'
12526 3' -55 NC_003345.1 + 28890 0.69 0.660175
Target:  5'- uACCCGca--GGAGGAugAGCugGUCg -3'
miRNA:   3'- cUGGGCuugcUCUCCUugUCGugCGG- -5'
12526 3' -55 NC_003345.1 + 30684 0.72 0.491944
Target:  5'- cGACUCGGAacCGAGAGGGaacGCGGUcgggcuugACGCCc -3'
miRNA:   3'- -CUGGGCUU--GCUCUCCU---UGUCG--------UGCGG- -5'
12526 3' -55 NC_003345.1 + 32403 0.66 0.811926
Target:  5'- --gUCGAACGucAGAacacGGGGCGGCGCGUCc -3'
miRNA:   3'- cugGGCUUGC--UCU----CCUUGUCGUGCGG- -5'
12526 3' -55 NC_003345.1 + 32536 0.66 0.829868
Target:  5'- cGAgCCGGACGAGcGGAAgAuGCucaccgaguuCGCCa -3'
miRNA:   3'- -CUgGGCUUGCUCuCCUUgU-CGu---------GCGG- -5'
12526 3' -55 NC_003345.1 + 32596 0.69 0.660175
Target:  5'- cGACCuCGugguUGGGuGGAACAGCaacggguucgacACGCCg -3'
miRNA:   3'- -CUGG-GCuu--GCUCuCCUUGUCG------------UGCGG- -5'
12526 3' -55 NC_003345.1 + 33852 0.66 0.829868
Target:  5'- gGugUgGGACGAGGGGAugGaCuacgACGCCa -3'
miRNA:   3'- -CugGgCUUGCUCUCCUugUcG----UGCGG- -5'
12526 3' -55 NC_003345.1 + 35285 0.67 0.783696
Target:  5'- aGGCCC-AAUGGGAGGcccGAgAGUuCGCCa -3'
miRNA:   3'- -CUGGGcUUGCUCUCC---UUgUCGuGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.