miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12526 5' -54.3 NC_003345.1 + 22490 0.66 0.865885
Target:  5'- --cGCGGCUGAcuaCUgUACGAUgGGGg -3'
miRNA:   3'- ggcCGCCGACUac-GAgAUGUUAgCCC- -5'
12526 5' -54.3 NC_003345.1 + 28520 0.67 0.832762
Target:  5'- gCGGUGGgaGuugGCUCUugAcgCGGc -3'
miRNA:   3'- gGCCGCCgaCua-CGAGAugUuaGCCc -5'
12526 5' -54.3 NC_003345.1 + 14240 0.67 0.814972
Target:  5'- aCCGGgGGUUGuccAUGaacgUCgugucGCAAUCGGGg -3'
miRNA:   3'- -GGCCgCCGAC---UACg---AGa----UGUUAGCCC- -5'
12526 5' -54.3 NC_003345.1 + 50361 0.67 0.803944
Target:  5'- cCCGGCGGUgguggcgguggaGGUGCUg-GCGGcuccuUCGGGg -3'
miRNA:   3'- -GGCCGCCGa-----------CUACGAgaUGUU-----AGCCC- -5'
12526 5' -54.3 NC_003345.1 + 73505 0.69 0.737336
Target:  5'- gCGGUGGCUGA-GCgaaucucucaggUCUACAA-CGGa -3'
miRNA:   3'- gGCCGCCGACUaCG------------AGAUGUUaGCCc -5'
12526 5' -54.3 NC_003345.1 + 41653 0.69 0.716717
Target:  5'- aCGGUGaGgaGuucagGCUCUACAAgCGGGa -3'
miRNA:   3'- gGCCGC-CgaCua---CGAGAUGUUaGCCC- -5'
12526 5' -54.3 NC_003345.1 + 42826 0.69 0.716717
Target:  5'- -aGGuCGGUgaGGUGUUCUuccCAAUCGGGg -3'
miRNA:   3'- ggCC-GCCGa-CUACGAGAu--GUUAGCCC- -5'
12526 5' -54.3 NC_003345.1 + 22817 0.69 0.716717
Target:  5'- uCCGGCGGCUucaGCUCgaACGAcUCGGu -3'
miRNA:   3'- -GGCCGCCGAcuaCGAGa-UGUU-AGCCc -5'
12526 5' -54.3 NC_003345.1 + 74391 0.7 0.663966
Target:  5'- gUCGGCGGaUUGGUGUUucCUACAuaAUCGGu -3'
miRNA:   3'- -GGCCGCC-GACUACGA--GAUGU--UAGCCc -5'
12526 5' -54.3 NC_003345.1 + 69570 0.71 0.620125
Target:  5'- gCGGCGGCgUGAcgcagacUGCUCccucgGCG-UCGGGu -3'
miRNA:   3'- gGCCGCCG-ACU-------ACGAGa----UGUuAGCCC- -5'
12526 5' -54.3 NC_003345.1 + 52774 0.74 0.456343
Target:  5'- aUGGCGGCuaUGAUGCUCUugAcUCcgaGGGc -3'
miRNA:   3'- gGCCGCCG--ACUACGAGAugUuAG---CCC- -5'
12526 5' -54.3 NC_003345.1 + 16942 1.13 0.00117
Target:  5'- uCCGGCGGCUGAUGCUCUACAAUCGGGg -3'
miRNA:   3'- -GGCCGCCGACUACGAGAUGUUAGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.