miRNA display CGI


Results 1 - 20 of 31 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12529 3' -51.5 NC_003345.1 + 6860 0.72 0.66802
Target:  5'- cUCGAAGAcCUCGGUAUcCaCAUCCCa -3'
miRNA:   3'- cAGCUUCUuGAGUCGUGaGcGUAGGG- -5'
12529 3' -51.5 NC_003345.1 + 7648 0.7 0.794165
Target:  5'- gGUCGAAGAACggAGCuACg-GCGUCCg -3'
miRNA:   3'- -CAGCUUCUUGagUCG-UGagCGUAGGg -5'
12529 3' -51.5 NC_003345.1 + 16194 0.66 0.943906
Target:  5'- aUCGAgccacGGAGCUucaacgacgacCGGCAUcggaGCAUCCCa -3'
miRNA:   3'- cAGCU-----UCUUGA-----------GUCGUGag--CGUAGGG- -5'
12529 3' -51.5 NC_003345.1 + 20165 1.11 0.002566
Target:  5'- gGUCGAAGAACUCAGCACUCGCAUCCCc -3'
miRNA:   3'- -CAGCUUCUUGAGUCGUGAGCGUAGGG- -5'
12529 3' -51.5 NC_003345.1 + 21720 0.67 0.916203
Target:  5'- -cCGgcGAACgucUCAGCAUcgagaaccuUCGCGUCCg -3'
miRNA:   3'- caGCuuCUUG---AGUCGUG---------AGCGUAGGg -5'
12529 3' -51.5 NC_003345.1 + 25506 0.69 0.840638
Target:  5'- cUCGGAGAGCgggaCGGCGCUgauagCGgGUUCCg -3'
miRNA:   3'- cAGCUUCUUGa---GUCGUGA-----GCgUAGGG- -5'
12529 3' -51.5 NC_003345.1 + 25836 0.66 0.928117
Target:  5'- cGUCGAAGuuCUCuGCGa--GCGUCCg -3'
miRNA:   3'- -CAGCUUCuuGAGuCGUgagCGUAGGg -5'
12529 3' -51.5 NC_003345.1 + 27197 0.66 0.943906
Target:  5'- -gUGGAGGGCgCAGuUACUCGuCGUCCg -3'
miRNA:   3'- caGCUUCUUGaGUC-GUGAGC-GUAGGg -5'
12529 3' -51.5 NC_003345.1 + 28406 0.71 0.722295
Target:  5'- cGUUGAGGAACaCGGCGa--GCGUCCUg -3'
miRNA:   3'- -CAGCUUCUUGaGUCGUgagCGUAGGG- -5'
12529 3' -51.5 NC_003345.1 + 29495 0.73 0.63496
Target:  5'- gGUCGuGGAAC-CAGCAgUCGgCGUCCa -3'
miRNA:   3'- -CAGCuUCUUGaGUCGUgAGC-GUAGGg -5'
12529 3' -51.5 NC_003345.1 + 32404 0.66 0.928117
Target:  5'- uGUCGAacgucAGAACaCGGgGCggCGCGUCCa -3'
miRNA:   3'- -CAGCU-----UCUUGaGUCgUGa-GCGUAGGg -5'
12529 3' -51.5 NC_003345.1 + 32979 0.67 0.91432
Target:  5'- aGUUGAGGAACUUuugGGUguucuccgaguauaGCUCGUAgaagCCCu -3'
miRNA:   3'- -CAGCUUCUUGAG---UCG--------------UGAGCGUa---GGG- -5'
12529 3' -51.5 NC_003345.1 + 34915 0.85 0.137271
Target:  5'- aGUCGAAGGACUCAGCGCUCgGCuauggCUCa -3'
miRNA:   3'- -CAGCUUCUUGAGUCGUGAG-CGua---GGG- -5'
12529 3' -51.5 NC_003345.1 + 36966 0.66 0.948619
Target:  5'- -aCGAGGGuggCGGCuucuCUUGCGUUCCg -3'
miRNA:   3'- caGCUUCUugaGUCGu---GAGCGUAGGG- -5'
12529 3' -51.5 NC_003345.1 + 38545 0.67 0.909829
Target:  5'- aGUUGAGGAACUUGGUAaucgaCGCAUCg- -3'
miRNA:   3'- -CAGCUUCUUGAGUCGUga---GCGUAGgg -5'
12529 3' -51.5 NC_003345.1 + 40922 0.67 0.916203
Target:  5'- -cCGAAGGccacCUCGGUAaagCGCGUCCUu -3'
miRNA:   3'- caGCUUCUu---GAGUCGUga-GCGUAGGG- -5'
12529 3' -51.5 NC_003345.1 + 44130 0.66 0.948619
Target:  5'- -aCGAAGAcCUUguucGCACUCGUcuguguUCCCg -3'
miRNA:   3'- caGCUUCUuGAGu---CGUGAGCGu-----AGGG- -5'
12529 3' -51.5 NC_003345.1 + 46674 0.73 0.595277
Target:  5'- uUCGAGGAgucgaaccGC-CAGCACUCGUucgacguugaggaguAUCCCg -3'
miRNA:   3'- cAGCUUCU--------UGaGUCGUGAGCG---------------UAGGG- -5'
12529 3' -51.5 NC_003345.1 + 48537 0.66 0.933657
Target:  5'- gGUCGAuaaagguuccAGAcggcuACUCGGUACUCGUcacuaaCCCg -3'
miRNA:   3'- -CAGCU----------UCU-----UGAGUCGUGAGCGua----GGG- -5'
12529 3' -51.5 NC_003345.1 + 51136 0.66 0.943906
Target:  5'- -aCGAGGucgucaccGACUUGGaCGCUCGCGUUCa -3'
miRNA:   3'- caGCUUC--------UUGAGUC-GUGAGCGUAGGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.