miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12529 3' -51.5 NC_003345.1 + 34915 0.85 0.137271
Target:  5'- aGUCGAAGGACUCAGCGCUCgGCuauggCUCa -3'
miRNA:   3'- -CAGCUUCUUGAGUCGUGAG-CGua---GGG- -5'
12529 3' -51.5 NC_003345.1 + 74380 0.66 0.953062
Target:  5'- gGUCGaAAGAGCgUCAGCgGCUCaauuuCGUCCg -3'
miRNA:   3'- -CAGC-UUCUUG-AGUCG-UGAGc----GUAGGg -5'
12529 3' -51.5 NC_003345.1 + 36966 0.66 0.948619
Target:  5'- -aCGAGGGuggCGGCuucuCUUGCGUUCCg -3'
miRNA:   3'- caGCUUCUugaGUCGu---GAGCGUAGGG- -5'
12529 3' -51.5 NC_003345.1 + 60107 0.66 0.948619
Target:  5'- uUgGGAGAGCUgAGC-CUgaGCGUUCCg -3'
miRNA:   3'- cAgCUUCUUGAgUCGuGAg-CGUAGGG- -5'
12529 3' -51.5 NC_003345.1 + 16194 0.66 0.943906
Target:  5'- aUCGAgccacGGAGCUucaacgacgacCGGCAUcggaGCAUCCCa -3'
miRNA:   3'- cAGCU-----UCUUGA-----------GUCGUGag--CGUAGGG- -5'
12529 3' -51.5 NC_003345.1 + 51136 0.66 0.943906
Target:  5'- -aCGAGGucgucaccGACUUGGaCGCUCGCGUUCa -3'
miRNA:   3'- caGCUUC--------UUGAGUC-GUGAGCGUAGGg -5'
12529 3' -51.5 NC_003345.1 + 48537 0.66 0.933657
Target:  5'- gGUCGAuaaagguuccAGAcggcuACUCGGUACUCGUcacuaaCCCg -3'
miRNA:   3'- -CAGCU----------UCU-----UGAGUCGUGAGCGua----GGG- -5'
12529 3' -51.5 NC_003345.1 + 73626 0.66 0.928117
Target:  5'- aGUCGucAGcGGCUCcGCGCcccaUCGCGUCCUc -3'
miRNA:   3'- -CAGCu-UC-UUGAGuCGUG----AGCGUAGGG- -5'
12529 3' -51.5 NC_003345.1 + 68616 0.66 0.927548
Target:  5'- cGUCGAugcuGAACgUCuGCucacgaacguccuGCgagCGCAUCCCg -3'
miRNA:   3'- -CAGCUu---CUUG-AGuCG-------------UGa--GCGUAGGG- -5'
12529 3' -51.5 NC_003345.1 + 28406 0.71 0.722295
Target:  5'- cGUUGAGGAACaCGGCGa--GCGUCCUg -3'
miRNA:   3'- -CAGCUUCUUGaGUCGUgagCGUAGGG- -5'
12529 3' -51.5 NC_003345.1 + 69999 0.71 0.753868
Target:  5'- uGUCaGAGAACUCGGC-CUCcuCGUCCUc -3'
miRNA:   3'- -CAGcUUCUUGAGUCGuGAGc-GUAGGG- -5'
12529 3' -51.5 NC_003345.1 + 69125 0.7 0.774312
Target:  5'- -cCGggGAACUC-GCcCUCGCucagcuucUCCCa -3'
miRNA:   3'- caGCuuCUUGAGuCGuGAGCGu-------AGGG- -5'
12529 3' -51.5 NC_003345.1 + 7648 0.7 0.794165
Target:  5'- gGUCGAAGAACggAGCuACg-GCGUCCg -3'
miRNA:   3'- -CAGCUUCUUGagUCG-UGagCGUAGGg -5'
12529 3' -51.5 NC_003345.1 + 67601 0.69 0.831746
Target:  5'- gGUCGggG-ACUCAa-GCUCGUauagaGUCCCa -3'
miRNA:   3'- -CAGCuuCuUGAGUcgUGAGCG-----UAGGG- -5'
12529 3' -51.5 NC_003345.1 + 75569 0.67 0.903182
Target:  5'- cGUCGggGucgaAGCUCGGCucaUCGCcgucuucUCCCc -3'
miRNA:   3'- -CAGCuuC----UUGAGUCGug-AGCGu------AGGG- -5'
12529 3' -51.5 NC_003345.1 + 20165 1.11 0.002566
Target:  5'- gGUCGAAGAACUCAGCACUCGCAUCCCc -3'
miRNA:   3'- -CAGCUUCUUGAGUCGUGAGCGUAGGG- -5'
12529 3' -51.5 NC_003345.1 + 27197 0.66 0.943906
Target:  5'- -gUGGAGGGCgCAGuUACUCGuCGUCCg -3'
miRNA:   3'- caGCUUCUUGaGUC-GUGAGC-GUAGGg -5'
12529 3' -51.5 NC_003345.1 + 25836 0.66 0.928117
Target:  5'- cGUCGAAGuuCUCuGCGa--GCGUCCg -3'
miRNA:   3'- -CAGCUUCuuGAGuCGUgagCGUAGGg -5'
12529 3' -51.5 NC_003345.1 + 32404 0.66 0.928117
Target:  5'- uGUCGAacgucAGAACaCGGgGCggCGCGUCCa -3'
miRNA:   3'- -CAGCU-----UCUUGaGUCgUGa-GCGUAGGg -5'
12529 3' -51.5 NC_003345.1 + 21720 0.67 0.916203
Target:  5'- -cCGgcGAACgucUCAGCAUcgagaaccuUCGCGUCCg -3'
miRNA:   3'- caGCuuCUUG---AGUCGUG---------AGCGUAGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.