miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12529 3' -51.5 NC_003345.1 + 46674 0.73 0.595277
Target:  5'- uUCGAGGAgucgaaccGC-CAGCACUCGUucgacguugaggaguAUCCCg -3'
miRNA:   3'- cAGCUUCU--------UGaGUCGUGAGCG---------------UAGGG- -5'
12529 3' -51.5 NC_003345.1 + 52566 0.68 0.873917
Target:  5'- aUCGAGGAugUuCAGCAcCUCGUugaCCu -3'
miRNA:   3'- cAGCUUCUugA-GUCGU-GAGCGuagGG- -5'
12529 3' -51.5 NC_003345.1 + 38545 0.67 0.909829
Target:  5'- aGUUGAGGAACUUGGUAaucgaCGCAUCg- -3'
miRNA:   3'- -CAGCUUCUUGAGUCGUga---GCGUAGgg -5'
12529 3' -51.5 NC_003345.1 + 32979 0.67 0.91432
Target:  5'- aGUUGAGGAACUUuugGGUguucuccgaguauaGCUCGUAgaagCCCu -3'
miRNA:   3'- -CAGCUUCUUGAG---UCG--------------UGAGCGUa---GGG- -5'
12529 3' -51.5 NC_003345.1 + 40922 0.67 0.916203
Target:  5'- -cCGAAGGccacCUCGGUAaagCGCGUCCUu -3'
miRNA:   3'- caGCUUCUu---GAGUCGUga-GCGUAGGG- -5'
12529 3' -51.5 NC_003345.1 + 21720 0.67 0.916203
Target:  5'- -cCGgcGAACgucUCAGCAUcgagaaccuUCGCGUCCg -3'
miRNA:   3'- caGCuuCUUG---AGUCGUG---------AGCGUAGGg -5'
12529 3' -51.5 NC_003345.1 + 32404 0.66 0.928117
Target:  5'- uGUCGAacgucAGAACaCGGgGCggCGCGUCCa -3'
miRNA:   3'- -CAGCU-----UCUUGaGUCgUGa-GCGUAGGg -5'
12529 3' -51.5 NC_003345.1 + 25836 0.66 0.928117
Target:  5'- cGUCGAAGuuCUCuGCGa--GCGUCCg -3'
miRNA:   3'- -CAGCUUCuuGAGuCGUgagCGUAGGg -5'
12529 3' -51.5 NC_003345.1 + 27197 0.66 0.943906
Target:  5'- -gUGGAGGGCgCAGuUACUCGuCGUCCg -3'
miRNA:   3'- caGCUUCUUGaGUC-GUGAGC-GUAGGg -5'
12529 3' -51.5 NC_003345.1 + 44130 0.66 0.948619
Target:  5'- -aCGAAGAcCUUguucGCACUCGUcuguguUCCCg -3'
miRNA:   3'- caGCUUCUuGAGu---CGUGAGCGu-----AGGG- -5'
12529 3' -51.5 NC_003345.1 + 20165 1.11 0.002566
Target:  5'- gGUCGAAGAACUCAGCACUCGCAUCCCc -3'
miRNA:   3'- -CAGCUUCUUGAGUCGUGAGCGUAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.