miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12533 5' -53 NC_003345.1 + 24268 1.13 0.001514
Target:  5'- gCCUCAGCGACAAGCUGGACGCGAAUCa -3'
miRNA:   3'- -GGAGUCGCUGUUCGACCUGCGCUUAG- -5'
12533 5' -53 NC_003345.1 + 34300 0.82 0.173593
Target:  5'- aCCUCAGCGACcAGCucaccgUGGACGUGAAg- -3'
miRNA:   3'- -GGAGUCGCUGuUCG------ACCUGCGCUUag -5'
12533 5' -53 NC_003345.1 + 46502 0.76 0.380112
Target:  5'- uCCUgAGCGACAAGCUGGAgGaCGu--- -3'
miRNA:   3'- -GGAgUCGCUGUUCGACCUgC-GCuuag -5'
12533 5' -53 NC_003345.1 + 1479 0.75 0.407096
Target:  5'- uCCUUAGCGAC-AGCuaUGGAaaCGUGAAUCc -3'
miRNA:   3'- -GGAGUCGCUGuUCG--ACCU--GCGCUUAG- -5'
12533 5' -53 NC_003345.1 + 31445 0.75 0.444881
Target:  5'- aCUUCAuuaucgguGCGACAAGCUGGACGU---UCg -3'
miRNA:   3'- -GGAGU--------CGCUGUUCGACCUGCGcuuAG- -5'
12533 5' -53 NC_003345.1 + 29662 0.74 0.484552
Target:  5'- -gUCAGCGAaAAGCUGGAgGCGGc-- -3'
miRNA:   3'- ggAGUCGCUgUUCGACCUgCGCUuag -5'
12533 5' -53 NC_003345.1 + 33142 0.73 0.505013
Target:  5'- cCCUCGGUGugGAGCUuccgGCGAAUCa -3'
miRNA:   3'- -GGAGUCGCugUUCGAccugCGCUUAG- -5'
12533 5' -53 NC_003345.1 + 68185 0.73 0.519555
Target:  5'- aCCUCAGCGuCGuucagagaagcacggAGCUGGACGUGc--- -3'
miRNA:   3'- -GGAGUCGCuGU---------------UCGACCUGCGCuuag -5'
12533 5' -53 NC_003345.1 + 13990 0.73 0.524789
Target:  5'- uCCUCAGCGugGucgaaguaggugaAGCUa-ACGCGAGUCu -3'
miRNA:   3'- -GGAGUCGCugU-------------UCGAccUGCGCUUAG- -5'
12533 5' -53 NC_003345.1 + 21712 0.71 0.655353
Target:  5'- gCUcCAGCGGCucGCUcGGugGCGAcUCc -3'
miRNA:   3'- gGA-GUCGCUGuuCGA-CCugCGCUuAG- -5'
12533 5' -53 NC_003345.1 + 12670 0.71 0.66623
Target:  5'- aCCUCAGCGGCGugAGCcGGuCGaacCGAGUUg -3'
miRNA:   3'- -GGAGUCGCUGU--UCGaCCuGC---GCUUAG- -5'
12533 5' -53 NC_003345.1 + 73513 0.7 0.687881
Target:  5'- aCC-CGGCGGCGguGGCUGa--GCGAAUCu -3'
miRNA:   3'- -GGaGUCGCUGU--UCGACcugCGCUUAG- -5'
12533 5' -53 NC_003345.1 + 20780 0.7 0.706122
Target:  5'- cCCUCGGCGuCGGGUaucuucccuuaaucUGGACGUGu-UCa -3'
miRNA:   3'- -GGAGUCGCuGUUCG--------------ACCUGCGCuuAG- -5'
12533 5' -53 NC_003345.1 + 67278 0.7 0.719935
Target:  5'- aCCUCGGCGGCAacgaaAGCgacGGugG-GAGUg -3'
miRNA:   3'- -GGAGUCGCUGU-----UCGa--CCugCgCUUAg -5'
12533 5' -53 NC_003345.1 + 14963 0.68 0.790242
Target:  5'- cCCggCAGCGcgGCGGGCUucgcuccgaacacGGGCGaCGAGUCc -3'
miRNA:   3'- -GGa-GUCGC--UGUUCGA-------------CCUGC-GCUUAG- -5'
12533 5' -53 NC_003345.1 + 12935 0.68 0.799877
Target:  5'- cCCUCgaAGCccaucacuugacgGGCGAGCUGGuCGauaGAAUCa -3'
miRNA:   3'- -GGAG--UCG-------------CUGUUCGACCuGCg--CUUAG- -5'
12533 5' -53 NC_003345.1 + 16363 0.67 0.837467
Target:  5'- aCUCAcgaacGCGACcgcuucgagaggGAGCUGGAacgaGCGGAUg -3'
miRNA:   3'- gGAGU-----CGCUG------------UUCGACCUg---CGCUUAg -5'
12533 5' -53 NC_003345.1 + 70207 0.67 0.838342
Target:  5'- cUCUCGGUgagGACGAGCUGGcaaacuucucuaucuCGCGGAa- -3'
miRNA:   3'- -GGAGUCG---CUGUUCGACCu--------------GCGCUUag -5'
12533 5' -53 NC_003345.1 + 77015 0.67 0.846119
Target:  5'- gUCUCGGuCGGgGAGCUGGuCGagccaaucCGggUCg -3'
miRNA:   3'- -GGAGUC-GCUgUUCGACCuGC--------GCuuAG- -5'
12533 5' -53 NC_003345.1 + 53139 0.67 0.846119
Target:  5'- gCUCAgGCGGCGcuccGGUgaaGGACGCGAc-- -3'
miRNA:   3'- gGAGU-CGCUGU----UCGa--CCUGCGCUuag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.