Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12533 | 5' | -53 | NC_003345.1 | + | 1479 | 0.75 | 0.407096 |
Target: 5'- uCCUUAGCGAC-AGCuaUGGAaaCGUGAAUCc -3' miRNA: 3'- -GGAGUCGCUGuUCG--ACCU--GCGCUUAG- -5' |
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12533 | 5' | -53 | NC_003345.1 | + | 12670 | 0.71 | 0.66623 |
Target: 5'- aCCUCAGCGGCGugAGCcGGuCGaacCGAGUUg -3' miRNA: 3'- -GGAGUCGCUGU--UCGaCCuGC---GCUUAG- -5' |
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12533 | 5' | -53 | NC_003345.1 | + | 12935 | 0.68 | 0.799877 |
Target: 5'- cCCUCgaAGCccaucacuugacgGGCGAGCUGGuCGauaGAAUCa -3' miRNA: 3'- -GGAG--UCG-------------CUGUUCGACCuGCg--CUUAG- -5' |
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12533 | 5' | -53 | NC_003345.1 | + | 13990 | 0.73 | 0.524789 |
Target: 5'- uCCUCAGCGugGucgaaguaggugaAGCUa-ACGCGAGUCu -3' miRNA: 3'- -GGAGUCGCugU-------------UCGAccUGCGCUUAG- -5' |
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12533 | 5' | -53 | NC_003345.1 | + | 14963 | 0.68 | 0.790242 |
Target: 5'- cCCggCAGCGcgGCGGGCUucgcuccgaacacGGGCGaCGAGUCc -3' miRNA: 3'- -GGa-GUCGC--UGUUCGA-------------CCUGC-GCUUAG- -5' |
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12533 | 5' | -53 | NC_003345.1 | + | 16363 | 0.67 | 0.837467 |
Target: 5'- aCUCAcgaacGCGACcgcuucgagaggGAGCUGGAacgaGCGGAUg -3' miRNA: 3'- gGAGU-----CGCUG------------UUCGACCUg---CGCUUAg -5' |
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12533 | 5' | -53 | NC_003345.1 | + | 20780 | 0.7 | 0.706122 |
Target: 5'- cCCUCGGCGuCGGGUaucuucccuuaaucUGGACGUGu-UCa -3' miRNA: 3'- -GGAGUCGCuGUUCG--------------ACCUGCGCuuAG- -5' |
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12533 | 5' | -53 | NC_003345.1 | + | 21179 | 0.66 | 0.885913 |
Target: 5'- gCC-CGGCGACGAGUcGGAUGauacGGUCa -3' miRNA: 3'- -GGaGUCGCUGUUCGaCCUGCgc--UUAG- -5' |
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12533 | 5' | -53 | NC_003345.1 | + | 21712 | 0.71 | 0.655353 |
Target: 5'- gCUcCAGCGGCucGCUcGGugGCGAcUCc -3' miRNA: 3'- gGA-GUCGCUGuuCGA-CCugCGCUuAG- -5' |
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12533 | 5' | -53 | NC_003345.1 | + | 21932 | 0.67 | 0.870717 |
Target: 5'- --cCAGCGACGAGCUGuucGACGUucuccGggUUc -3' miRNA: 3'- ggaGUCGCUGUUCGAC---CUGCG-----CuuAG- -5' |
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12533 | 5' | -53 | NC_003345.1 | + | 24196 | 0.66 | 0.87844 |
Target: 5'- aUCUCAgGCGGCAAGCaGGAgcauugGCGAGc- -3' miRNA: 3'- -GGAGU-CGCUGUUCGaCCUg-----CGCUUag -5' |
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12533 | 5' | -53 | NC_003345.1 | + | 24268 | 1.13 | 0.001514 |
Target: 5'- gCCUCAGCGACAAGCUGGACGCGAAUCa -3' miRNA: 3'- -GGAGUCGCUGUUCGACCUGCGCUUAG- -5' |
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12533 | 5' | -53 | NC_003345.1 | + | 24580 | 0.67 | 0.85455 |
Target: 5'- uCCUCGGCGGCA----GGACGcCGGgagGUCg -3' miRNA: 3'- -GGAGUCGCUGUucgaCCUGC-GCU---UAG- -5' |
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12533 | 5' | -53 | NC_003345.1 | + | 26238 | 0.66 | 0.888831 |
Target: 5'- aCUCAGCGAUAgacuccucgaAGUcacccggcggcuugaUGGAacccgaGCGAAUCa -3' miRNA: 3'- gGAGUCGCUGU----------UCG---------------ACCUg-----CGCUUAG- -5' |
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12533 | 5' | -53 | NC_003345.1 | + | 29662 | 0.74 | 0.484552 |
Target: 5'- -gUCAGCGAaAAGCUGGAgGCGGc-- -3' miRNA: 3'- ggAGUCGCUgUUCGACCUgCGCUuag -5' |
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12533 | 5' | -53 | NC_003345.1 | + | 31445 | 0.75 | 0.444881 |
Target: 5'- aCUUCAuuaucgguGCGACAAGCUGGACGU---UCg -3' miRNA: 3'- -GGAGU--------CGCUGUUCGACCUGCGcuuAG- -5' |
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12533 | 5' | -53 | NC_003345.1 | + | 33142 | 0.73 | 0.505013 |
Target: 5'- cCCUCGGUGugGAGCUuccgGCGAAUCa -3' miRNA: 3'- -GGAGUCGCugUUCGAccugCGCUUAG- -5' |
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12533 | 5' | -53 | NC_003345.1 | + | 34300 | 0.82 | 0.173593 |
Target: 5'- aCCUCAGCGACcAGCucaccgUGGACGUGAAg- -3' miRNA: 3'- -GGAGUCGCUGuUCG------ACCUGCGCUUag -5' |
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12533 | 5' | -53 | NC_003345.1 | + | 46502 | 0.76 | 0.380112 |
Target: 5'- uCCUgAGCGACAAGCUGGAgGaCGu--- -3' miRNA: 3'- -GGAgUCGCUGUUCGACCUgC-GCuuag -5' |
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12533 | 5' | -53 | NC_003345.1 | + | 53139 | 0.67 | 0.846119 |
Target: 5'- gCUCAgGCGGCGcuccGGUgaaGGACGCGAc-- -3' miRNA: 3'- gGAGU-CGCUGU----UCGa--CCUGCGCUuag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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