miRNA display CGI


Results 1 - 15 of 15 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12565 5' -53.3 NC_003345.1 + 50434 0.66 0.907178
Target:  5'- gCUCguaUCGGgAGGugGagccgcUGGCgGAGAUGGc -3'
miRNA:   3'- -GAG---AGCCgUCUugC------AUCGgCUCUACC- -5'
12565 5' -53.3 NC_003345.1 + 42979 0.66 0.900563
Target:  5'- -gUUCGGUAGAugGggAGCCGAcGAa-- -3'
miRNA:   3'- gaGAGCCGUCUugCa-UCGGCU-CUacc -5'
12565 5' -53.3 NC_003345.1 + 67666 0.66 0.87918
Target:  5'- cCUCUCGGgGGAAUa-GGaacaCGGGGUGGu -3'
miRNA:   3'- -GAGAGCCgUCUUGcaUCg---GCUCUACC- -5'
12565 5' -53.3 NC_003345.1 + 52041 0.66 0.87918
Target:  5'- aUCUCGGCucuacCGUuuGCCGAGucGUGGc -3'
miRNA:   3'- gAGAGCCGucuu-GCAu-CGGCUC--UACC- -5'
12565 5' -53.3 NC_003345.1 + 12755 0.67 0.855592
Target:  5'- -aCUCGGCAGAAaacuGCCGGGcgaGGu -3'
miRNA:   3'- gaGAGCCGUCUUgcauCGGCUCua-CC- -5'
12565 5' -53.3 NC_003345.1 + 27649 0.67 0.855592
Target:  5'- -aUUCGGCccgcuGACGUGGCUGAaauGAUGGc -3'
miRNA:   3'- gaGAGCCGuc---UUGCAUCGGCU---CUACC- -5'
12565 5' -53.3 NC_003345.1 + 73522 0.67 0.847268
Target:  5'- --gUCGGCAGAACccGGCgGcGGUGGc -3'
miRNA:   3'- gagAGCCGUCUUGcaUCGgCuCUACC- -5'
12565 5' -53.3 NC_003345.1 + 32107 0.68 0.821024
Target:  5'- -cCUCGGCAgGGACGUAGaaGuAGgcGGg -3'
miRNA:   3'- gaGAGCCGU-CUUGCAUCggC-UCuaCC- -5'
12565 5' -53.3 NC_003345.1 + 48821 0.68 0.802556
Target:  5'- aUCUCGGUGGAACGgaaucacCUGAauGAUGGg -3'
miRNA:   3'- gAGAGCCGUCUUGCauc----GGCU--CUACC- -5'
12565 5' -53.3 NC_003345.1 + 24581 0.69 0.7834
Target:  5'- cCUCggCGGCAGGAC---GCCGGGA-GGu -3'
miRNA:   3'- -GAGa-GCCGUCUUGcauCGGCUCUaCC- -5'
12565 5' -53.3 NC_003345.1 + 65016 0.7 0.701573
Target:  5'- -aUUCGGCAGAACGUu-CCGAcuUGGg -3'
miRNA:   3'- gaGAGCCGUCUUGCAucGGCUcuACC- -5'
12565 5' -53.3 NC_003345.1 + 54194 0.7 0.680247
Target:  5'- aUCUCGGCu--ACGUucuGCCGAGAg-- -3'
miRNA:   3'- gAGAGCCGucuUGCAu--CGGCUCUacc -5'
12565 5' -53.3 NC_003345.1 + 61270 0.71 0.647953
Target:  5'- uUCcagCGGCAGAuauuCGaGGCCGAGAaGGu -3'
miRNA:   3'- gAGa--GCCGUCUu---GCaUCGGCUCUaCC- -5'
12565 5' -53.3 NC_003345.1 + 52142 0.72 0.593972
Target:  5'- -aCUCGGCA-AACGguagAGCCGAGAuuacuucgagUGGg -3'
miRNA:   3'- gaGAGCCGUcUUGCa---UCGGCUCU----------ACC- -5'
12565 5' -53.3 NC_003345.1 + 54295 1.11 0.001937
Target:  5'- uCUCUCGGCAGAACGUAGCCGAGAUGGa -3'
miRNA:   3'- -GAGAGCCGUCUUGCAUCGGCUCUACC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.