miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12566 5' -47 NC_003345.1 + 69253 0.66 0.99797
Target:  5'- uCGAAGCUGACcccGGCGAgUGGGAGaagcUGAg- -3'
miRNA:   3'- -GCUUUGGCUG---UUGCU-ACCUUC----ACUac -5'
12566 5' -47 NC_003345.1 + 11660 0.66 0.99797
Target:  5'- -cGAGCCGACGAUGGUGuucguGUGAa- -3'
miRNA:   3'- gcUUUGGCUGUUGCUACcuu--CACUac -5'
12566 5' -47 NC_003345.1 + 36219 0.67 0.99584
Target:  5'- uGAAAUCGACu-CGAUGGAGuUGGc- -3'
miRNA:   3'- gCUUUGGCUGuuGCUACCUUcACUac -5'
12566 5' -47 NC_003345.1 + 55717 0.67 0.995088
Target:  5'- aCGAuacucguCCGGCggUGGUGGGgcgGGUGAa- -3'
miRNA:   3'- -GCUuu-----GGCUGuuGCUACCU---UCACUac -5'
12566 5' -47 NC_003345.1 + 50361 0.69 0.984342
Target:  5'- ----cCCGGCGguggugGCGGUGGAGGUGcUGg -3'
miRNA:   3'- gcuuuGGCUGU------UGCUACCUUCACuAC- -5'
12566 5' -47 NC_003345.1 + 73516 0.69 0.982241
Target:  5'- aGAAcCCGGCGGCGGUGGcuGAGcGAa- -3'
miRNA:   3'- gCUUuGGCUGUUGCUACC--UUCaCUac -5'
12566 5' -47 NC_003345.1 + 21131 0.7 0.972906
Target:  5'- gGAcGCUGACGACG-UGGAGGUaaucgacggaaucguGAUGg -3'
miRNA:   3'- gCUuUGGCUGUUGCuACCUUCA---------------CUAC- -5'
12566 5' -47 NC_003345.1 + 45138 0.7 0.964976
Target:  5'- uCGGguuAACCGACGAgGAgagGGAGGUcGUGg -3'
miRNA:   3'- -GCU---UUGGCUGUUgCUa--CCUUCAcUAC- -5'
12566 5' -47 NC_003345.1 + 42856 0.7 0.964976
Target:  5'- uCGAGGCCGACGAUG-UGGGgugucguacagaGGUcGGUGa -3'
miRNA:   3'- -GCUUUGGCUGUUGCuACCU------------UCA-CUAC- -5'
12566 5' -47 NC_003345.1 + 73431 0.71 0.952941
Target:  5'- cCGGGuucuGCCGACu-CGAUGG-AGUGAUa -3'
miRNA:   3'- -GCUU----UGGCUGuuGCUACCuUCACUAc -5'
12566 5' -47 NC_003345.1 + 57053 0.71 0.945503
Target:  5'- uCGAAACCGACGagucacuacuuccagACGAugUGGAAG-GGUa -3'
miRNA:   3'- -GCUUUGGCUGU---------------UGCU--ACCUUCaCUAc -5'
12566 5' -47 NC_003345.1 + 62068 0.71 0.94353
Target:  5'- -cGAGCCGGagUAGCuGAUGGAAGUGAc- -3'
miRNA:   3'- gcUUUGGCU--GUUG-CUACCUUCACUac -5'
12566 5' -47 NC_003345.1 + 50419 0.71 0.94353
Target:  5'- uGGAGCCGcugGCGGaGAUGGcGGUGGUGa -3'
miRNA:   3'- gCUUUGGC---UGUUgCUACCuUCACUAC- -5'
12566 5' -47 NC_003345.1 + 3388 0.73 0.879151
Target:  5'- aGAGAgCGGCGgauuGCGAUGGAAGcGAUa -3'
miRNA:   3'- gCUUUgGCUGU----UGCUACCUUCaCUAc -5'
12566 5' -47 NC_003345.1 + 50135 0.74 0.836679
Target:  5'- aCGAAGgcuCCGGCGgcuccgGCGGUGGAGGUGGc- -3'
miRNA:   3'- -GCUUU---GGCUGU------UGCUACCUUCACUac -5'
12566 5' -47 NC_003345.1 + 67266 0.79 0.5907
Target:  5'- aCGAAA---GCGACGGUGGGAGUGGUGg -3'
miRNA:   3'- -GCUUUggcUGUUGCUACCUUCACUAC- -5'
12566 5' -47 NC_003345.1 + 59133 1.11 0.008827
Target:  5'- cCGAAACCGACAACGAUGGAAGUGAUGg -3'
miRNA:   3'- -GCUUUGGCUGUUGCUACCUUCACUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.