miRNA display CGI

Results 1 - 10 of 10 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
1257	3'	-56.2	NC_001317.1	+	9918	0.66	0.494069
	Target:  5'- gUGCUGCuGCUGGcaAUCGGUGGCGAGc -3' miRNA:   3'- gGCGAUGuCGGUC--UGGCCGUUGCUCc -5'
1257	3'	-56.2	NC_001317.1	+	5569	0.67	0.483548
	Target:  5'- -aGCuUACGGCCAacgaUGGCAACGAGu -3' miRNA:   3'- ggCG-AUGUCGGUcug-GCCGUUGCUCc -5'
1257	3'	-56.2	NC_001317.1	+	17806	0.67	0.462837
	Target:  5'- aCCGCUGCguuuaaAGCCucGGA-CGGUAAaacCGAGGa -3' miRNA:   3'- -GGCGAUG------UCGG--UCUgGCCGUU---GCUCC- -5'
1257	3'	-56.2	NC_001317.1	+	5982	0.69	0.355584
	Target:  5'- cCCGCUGCgcggcuugagaGGCCgAGACCcGCAucaugugacgcuguGCGGGGc -3' miRNA:   3'- -GGCGAUG-----------UCGG-UCUGGcCGU--------------UGCUCC- -5'
1257	3'	-56.2	NC_001317.1	+	9295	0.69	0.341035
	Target:  5'- gCCGCcGguGaCAGGCUGGCAaucagaccgGCGAGGc -3' miRNA:   3'- -GGCGaUguCgGUCUGGCCGU---------UGCUCC- -5'
1257	3'	-56.2	NC_001317.1	+	17024	0.7	0.308522
	Target:  5'- cCUGCUGCGGCCAuguuACCGGCAAg---- -3' miRNA:   3'- -GGCGAUGUCGGUc---UGGCCGUUgcucc -5'
1257	3'	-56.2	NC_001317.1	+	316	0.71	0.280603
	Target:  5'- gCCGCUGCAGgacagguUCAGggagguaaacgacugGCuCGGCAugGAGGu -3' miRNA:   3'- -GGCGAUGUC-------GGUC---------------UG-GCCGUugCUCC- -5'
1257	3'	-56.2	NC_001317.1	+	4377	0.71	0.250058
	Target:  5'- gCGCUGCAGCggguugugcuucgCAGugCGGCAGaauuCGAGa -3' miRNA:   3'- gGCGAUGUCG-------------GUCugGCCGUU----GCUCc -5'
1257	3'	-56.2	NC_001317.1	+	9544	0.74	0.176113
	Target:  5'- aCCGCaACAGCCGGGauGuGCAguACGAGGc -3' miRNA:   3'- -GGCGaUGUCGGUCUggC-CGU--UGCUCC- -5'
1257	3'	-56.2	NC_001317.1	+	3465	1.12	0.000273
	Target:  5'- aCCGCUACAGCCAGACCGGCAACGAGGc -3' miRNA:   3'- -GGCGAUGUCGGUCUGGCCGUUGCUCC- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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