miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12572 5' -51.7 NC_003345.1 + 45800 0.66 0.938124
Target:  5'- uUGAUGGAGucaacGaCcUGUcgauUCCCGACGAg- -3'
miRNA:   3'- -ACUACCUCu----C-GaACA----AGGGCUGCUac -5'
12572 5' -51.7 NC_003345.1 + 26507 0.67 0.9021
Target:  5'- cUGAUGGAGGGCUacua--CGACGAg- -3'
miRNA:   3'- -ACUACCUCUCGAacaaggGCUGCUac -5'
12572 5' -51.7 NC_003345.1 + 12977 0.68 0.864638
Target:  5'- gGA-GGAGAGCaUGaaCCCGAUGGa- -3'
miRNA:   3'- aCUaCCUCUCGaACaaGGGCUGCUac -5'
12572 5' -51.7 NC_003345.1 + 27872 0.69 0.839187
Target:  5'- cGAUGGGGuGUUUGacCCCaaguaucgGGCGAUGa -3'
miRNA:   3'- aCUACCUCuCGAACaaGGG--------CUGCUAC- -5'
12572 5' -51.7 NC_003345.1 + 75671 0.7 0.782636
Target:  5'- cGAUGagccGAGCUUcGacCCCGACGAUGa -3'
miRNA:   3'- aCUACcu--CUCGAA-CaaGGGCUGCUAC- -5'
12572 5' -51.7 NC_003345.1 + 9970 0.71 0.730032
Target:  5'- -cGUGGAGAGCcUGUUCCCaccuucuGAUGAa- -3'
miRNA:   3'- acUACCUCUCGaACAAGGG-------CUGCUac -5'
12572 5' -51.7 NC_003345.1 + 53563 0.84 0.152423
Target:  5'- gGAUGGAGAGCUUGgugugaCUGACGAUGu -3'
miRNA:   3'- aCUACCUCUCGAACaag---GGCUGCUAC- -5'
12572 5' -51.7 NC_003345.1 + 66301 1.09 0.00323
Target:  5'- cUGAUGGAGAGCUUGUUCCCGACGAUGa -3'
miRNA:   3'- -ACUACCUCUCGAACAAGGGCUGCUAC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.