miRNA display CGI


Results 21 - 30 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12577 3' -51.1 NC_003345.1 + 50440 0.66 0.960438
Target:  5'- gGCGAAGcuCGu--AUCGggagguggAGCCGCUGg -3'
miRNA:   3'- -CGCUUCuuGCuguUAGCa-------UCGGCGGC- -5'
12577 3' -51.1 NC_003345.1 + 53931 0.67 0.947876
Target:  5'- cGCGGAGGuuuucgucCGACucgCGguucucGCCGCCGg -3'
miRNA:   3'- -CGCUUCUu-------GCUGuuaGCau----CGGCGGC- -5'
12577 3' -51.1 NC_003345.1 + 60900 0.66 0.968849
Target:  5'- uGCGAAGAcccucgauggguuagGCGACAAUC-UGGuuGaCGa -3'
miRNA:   3'- -CGCUUCU---------------UGCUGUUAGcAUCggCgGC- -5'
12577 3' -51.1 NC_003345.1 + 65685 0.68 0.919799
Target:  5'- gGUGAGGugauUGACAcccacuacgcucguGUCaGUAGCCGCCc -3'
miRNA:   3'- -CGCUUCuu--GCUGU--------------UAG-CAUCGGCGGc -5'
12577 3' -51.1 NC_003345.1 + 69852 0.72 0.70185
Target:  5'- aGCGAAGAcguUGAUGguaacaccaucGUCGUcGCCGCCGa -3'
miRNA:   3'- -CGCUUCUu--GCUGU-----------UAGCAuCGGCGGC- -5'
12577 3' -51.1 NC_003345.1 + 71147 0.71 0.784613
Target:  5'- aGCG-AGAGuCG-CAGUCGUAaucGCCGCCc -3'
miRNA:   3'- -CGCuUCUU-GCuGUUAGCAU---CGGCGGc -5'
12577 3' -51.1 NC_003345.1 + 71296 1.11 0.003443
Target:  5'- uGCGAAGAACGACAAUCGUAGCCGCCGu -3'
miRNA:   3'- -CGCUUCUUGCUGUUAGCAUCGGCGGC- -5'
12577 3' -51.1 NC_003345.1 + 72873 0.67 0.938177
Target:  5'- gGCGAgcGGAugGACu-UC---GCCGCCGa -3'
miRNA:   3'- -CGCU--UCUugCUGuuAGcauCGGCGGC- -5'
12577 3' -51.1 NC_003345.1 + 73736 0.67 0.943161
Target:  5'- -aGAGGAcGCGAUGGggcgCGgAGCCGCUGa -3'
miRNA:   3'- cgCUUCU-UGCUGUUa---GCaUCGGCGGC- -5'
12577 3' -51.1 NC_003345.1 + 75130 0.68 0.908523
Target:  5'- uGCGAA-AACuGCGAUUGUGGCCuuucugaGCCGg -3'
miRNA:   3'- -CGCUUcUUGcUGUUAGCAUCGG-------CGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.