miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12581 3' -47.5 NC_003345.1 + 46710 0.66 0.99782
Target:  5'- gGGGcgUGGCGGAa-CGGUGAGc-CGGg -3'
miRNA:   3'- -CUUuuGCCGCCUaaGCCAUUCauGCC- -5'
12581 3' -47.5 NC_003345.1 + 61142 0.66 0.997082
Target:  5'- --cGGCGGCGGuaauggUCGGcGcucucggagugagacAGUACGGu -3'
miRNA:   3'- cuuUUGCCGCCua----AGCCaU---------------UCAUGCC- -5'
12581 3' -47.5 NC_003345.1 + 66431 0.66 0.996868
Target:  5'- ---uACGGCGcGAUgCGGgacagGAGUggcGCGGa -3'
miRNA:   3'- cuuuUGCCGC-CUAaGCCa----UUCA---UGCC- -5'
12581 3' -47.5 NC_003345.1 + 55609 0.66 0.996868
Target:  5'- cGAAAACGGuuGGUUCgcuGGUGGugGCGGu -3'
miRNA:   3'- -CUUUUGCCgcCUAAG---CCAUUcaUGCC- -5'
12581 3' -47.5 NC_003345.1 + 40669 0.66 0.996868
Target:  5'- cAAGACGGCGcGGUggUGGUcguuuguggguaGAGUGCGu -3'
miRNA:   3'- cUUUUGCCGC-CUAa-GCCA------------UUCAUGCc -5'
12581 3' -47.5 NC_003345.1 + 457 0.66 0.995596
Target:  5'- aGAGACGGaCGGA--CGGgGAGagACGGg -3'
miRNA:   3'- cUUUUGCC-GCCUaaGCCaUUCa-UGCC- -5'
12581 3' -47.5 NC_003345.1 + 11327 0.67 0.99393
Target:  5'- --uGACGGUGaGcaaGUUCGGgAAGUugGGu -3'
miRNA:   3'- cuuUUGCCGC-C---UAAGCCaUUCAugCC- -5'
12581 3' -47.5 NC_003345.1 + 67259 0.67 0.99393
Target:  5'- --cGACGGUGGGagUGGUGGGaACGa -3'
miRNA:   3'- cuuUUGCCGCCUaaGCCAUUCaUGCc -5'
12581 3' -47.5 NC_003345.1 + 3388 0.67 0.99393
Target:  5'- aGAGAGCGGCGGAUUgCGaUGGaaGCGa -3'
miRNA:   3'- -CUUUUGCCGCCUAA-GCcAUUcaUGCc -5'
12581 3' -47.5 NC_003345.1 + 15411 0.67 0.992925
Target:  5'- aGAGAACGaGCGGA--UGG-AAG-ACGGa -3'
miRNA:   3'- -CUUUUGC-CGCCUaaGCCaUUCaUGCC- -5'
12581 3' -47.5 NC_003345.1 + 50359 0.68 0.990518
Target:  5'- --cGGCGGUGGuggCGGUGgaGGUGCuGGc -3'
miRNA:   3'- cuuUUGCCGCCuaaGCCAU--UCAUG-CC- -5'
12581 3' -47.5 NC_003345.1 + 429 0.68 0.989095
Target:  5'- aGAGACGGaCGGAacCGGaGAG-ACGGa -3'
miRNA:   3'- cUUUUGCC-GCCUaaGCCaUUCaUGCC- -5'
12581 3' -47.5 NC_003345.1 + 55826 0.68 0.985755
Target:  5'- aGAGAUGG-GGGUUCuGGUGguGGUGCGa -3'
miRNA:   3'- cUUUUGCCgCCUAAG-CCAU--UCAUGCc -5'
12581 3' -47.5 NC_003345.1 + 10255 0.68 0.983816
Target:  5'- uAGAGCGGCGGGagUGGcgaGAGUaaACGGc -3'
miRNA:   3'- cUUUUGCCGCCUaaGCCa--UUCA--UGCC- -5'
12581 3' -47.5 NC_003345.1 + 50778 0.69 0.976796
Target:  5'- uGGAAACGGCGGGgacgcuggCGG-GAGUAUa- -3'
miRNA:   3'- -CUUUUGCCGCCUaa------GCCaUUCAUGcc -5'
12581 3' -47.5 NC_003345.1 + 26555 0.7 0.964261
Target:  5'- --uAGCGGCGGA---GGUGGGU-CGGc -3'
miRNA:   3'- cuuUUGCCGCCUaagCCAUUCAuGCC- -5'
12581 3' -47.5 NC_003345.1 + 45444 0.7 0.956478
Target:  5'- aGAAGGCGGCGGuucagcUCGGUAucGUuaGCGa -3'
miRNA:   3'- -CUUUUGCCGCCua----AGCCAUu-CA--UGCc -5'
12581 3' -47.5 NC_003345.1 + 36012 0.71 0.942767
Target:  5'- cGGAGACGGCGuuUcCGGUGaAGUGgGGa -3'
miRNA:   3'- -CUUUUGCCGCcuAaGCCAU-UCAUgCC- -5'
12581 3' -47.5 NC_003345.1 + 60697 0.71 0.937635
Target:  5'- gGAAGGCGcG-GGAUUCGGcacGAGUGCGa -3'
miRNA:   3'- -CUUUUGC-CgCCUAAGCCa--UUCAUGCc -5'
12581 3' -47.5 NC_003345.1 + 59403 0.72 0.926515
Target:  5'- cGAAuuACGGCGGugcuggcUCGGguAGUACGGu -3'
miRNA:   3'- -CUUu-UGCCGCCua-----AGCCauUCAUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.