miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12585 5' -53.8 NC_003345.1 + 47127 0.68 0.765344
Target:  5'- uGAAGCucaccGGGCCggaCGCCUCGccACCa -3'
miRNA:   3'- cCUUCGuu---UCCGG---GCGGAGCuuUGGg -5'
12585 5' -53.8 NC_003345.1 + 56535 0.68 0.772303
Target:  5'- aGAGGUcAGGGCcucgauagccgaaaCCGCCUCcGAAUCCg -3'
miRNA:   3'- cCUUCGuUUCCG--------------GGCGGAGcUUUGGG- -5'
12585 5' -53.8 NC_003345.1 + 77610 0.68 0.765344
Target:  5'- aGGggGCGGGgggagagacGGCCCGCg-CGggGCa- -3'
miRNA:   3'- -CCuuCGUUU---------CCGGGCGgaGCuuUGgg -5'
12585 5' -53.8 NC_003345.1 + 30668 0.68 0.755291
Target:  5'- gGGAAcGCGGucGGGCUugaCGCCcuUCGGAACCa -3'
miRNA:   3'- -CCUU-CGUU--UCCGG---GCGG--AGCUUUGGg -5'
12585 5' -53.8 NC_003345.1 + 19801 0.69 0.743068
Target:  5'- gGGAAGCGAccGGCggaaucgaaccaCGCCUUGAcccuACCCa -3'
miRNA:   3'- -CCUUCGUUu-CCGg-----------GCGGAGCUu---UGGG- -5'
12585 5' -53.8 NC_003345.1 + 59439 0.7 0.66066
Target:  5'- uGAAGCcgAAAGGCCCGCC----GACCa -3'
miRNA:   3'- cCUUCG--UUUCCGGGCGGagcuUUGGg -5'
12585 5' -53.8 NC_003345.1 + 65332 0.7 0.64988
Target:  5'- uGGuAGCGGugacAGGCUCGaCCUCG-AAUCCa -3'
miRNA:   3'- -CCuUCGUU----UCCGGGC-GGAGCuUUGGG- -5'
12585 5' -53.8 NC_003345.1 + 15066 0.72 0.542703
Target:  5'- cGGAGCGAA-GCCCGCCgCGAcuGCCg -3'
miRNA:   3'- cCUUCGUUUcCGGGCGGaGCUu-UGGg -5'
12585 5' -53.8 NC_003345.1 + 73608 0.73 0.511513
Target:  5'- -cGAGCAugAAGGCCCGCgUCGguAUCUc -3'
miRNA:   3'- ccUUCGU--UUCCGGGCGgAGCuuUGGG- -5'
12585 5' -53.8 NC_003345.1 + 71961 0.73 0.471146
Target:  5'- -cAGGCGAAGcaaCCGCCUCGAuGCCUg -3'
miRNA:   3'- ccUUCGUUUCcg-GGCGGAGCUuUGGG- -5'
12585 5' -53.8 NC_003345.1 + 323 0.68 0.765344
Target:  5'- aGGggGCGGGgggagagacGGCCCGCg-CGggGCa- -3'
miRNA:   3'- -CCuuCGUUU---------CCGGGCGgaGCuuUGgg -5'
12585 5' -53.8 NC_003345.1 + 56646 0.68 0.785044
Target:  5'- cGGAGGCGGuuucGGCUa---UCGAGGCCCu -3'
miRNA:   3'- -CCUUCGUUu---CCGGgcggAGCUUUGGG- -5'
12585 5' -53.8 NC_003345.1 + 62742 0.66 0.887721
Target:  5'- uGAAGC--GGGUauCCGCUUCGGAuucACUCg -3'
miRNA:   3'- cCUUCGuuUCCG--GGCGGAGCUU---UGGG- -5'
12585 5' -53.8 NC_003345.1 + 30697 0.66 0.880387
Target:  5'- -uGAGCcGGGaGUCCGaCUCGGAACCg -3'
miRNA:   3'- ccUUCGuUUC-CGGGCgGAGCUUUGGg -5'
12585 5' -53.8 NC_003345.1 + 61624 0.66 0.872806
Target:  5'- aGGAAGCGAAGGaaCGCaUCGAGGa-- -3'
miRNA:   3'- -CCUUCGUUUCCggGCGgAGCUUUggg -5'
12585 5' -53.8 NC_003345.1 + 59105 0.66 0.85693
Target:  5'- cGAAGUAAAucGGCCUGCUcuuuUCGAGuucGCgCCg -3'
miRNA:   3'- cCUUCGUUU--CCGGGCGG----AGCUU---UG-GG- -5'
12585 5' -53.8 NC_003345.1 + 5522 0.67 0.848649
Target:  5'- cGGAGCGGGGGUaucCCUCGguAUCCa -3'
miRNA:   3'- cCUUCGUUUCCGggcGGAGCuuUGGG- -5'
12585 5' -53.8 NC_003345.1 + 54332 0.67 0.831439
Target:  5'- aGAcAGCcugcGGCCCGCuCUCGggGCg- -3'
miRNA:   3'- cCU-UCGuuu-CCGGGCG-GAGCuuUGgg -5'
12585 5' -53.8 NC_003345.1 + 69321 0.68 0.804132
Target:  5'- cGAGGCuGAGcGCCCGUUcCGcGACCUg -3'
miRNA:   3'- cCUUCGuUUC-CGGGCGGaGCuUUGGG- -5'
12585 5' -53.8 NC_003345.1 + 32543 0.68 0.785044
Target:  5'- gGGAAGCGuuccccAAGGCCgUGaCCgUCGAggucgaugaAGCCCa -3'
miRNA:   3'- -CCUUCGU------UUCCGG-GC-GG-AGCU---------UUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.