miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12585 5' -53.8 NC_003345.1 + 70673 0.67 0.840149
Target:  5'- -uGGGuCGGAGcGCCCGUgUUGAAcACCCg -3'
miRNA:   3'- ccUUC-GUUUC-CGGGCGgAGCUU-UGGG- -5'
12585 5' -53.8 NC_003345.1 + 30956 0.68 0.784073
Target:  5'- -cGAGCgGAAGGCCCGUccucccuCUCGGGACg- -3'
miRNA:   3'- ccUUCG-UUUCCGGGCG-------GAGCUUUGgg -5'
12585 5' -53.8 NC_003345.1 + 2452 0.68 0.785044
Target:  5'- uGGcAAGUAAAGG-CCGCCaaGAGGCUa -3'
miRNA:   3'- -CC-UUCGUUUCCgGGCGGagCUUUGGg -5'
12585 5' -53.8 NC_003345.1 + 71853 0.68 0.793714
Target:  5'- uGAAGCAggcaucGAGGCgguugcuUCGCCugUCGAAccGCCCa -3'
miRNA:   3'- cCUUCGU------UUCCG-------GGCGG--AGCUU--UGGG- -5'
12585 5' -53.8 NC_003345.1 + 22865 0.68 0.79467
Target:  5'- -cGAGCGGcAGGCCCGgCaggaagCGGGACUCg -3'
miRNA:   3'- ccUUCGUU-UCCGGGCgGa-----GCUUUGGG- -5'
12585 5' -53.8 NC_003345.1 + 51482 0.68 0.804132
Target:  5'- -cAAGCGuAGuGCCCGUCUCGucuUCCa -3'
miRNA:   3'- ccUUCGUuUC-CGGGCGGAGCuuuGGG- -5'
12585 5' -53.8 NC_003345.1 + 59502 0.67 0.813421
Target:  5'- cGAAGCGAGuccGGCCauCGCgCUCGAAccaguaauCCCg -3'
miRNA:   3'- cCUUCGUUU---CCGG--GCG-GAGCUUu-------GGG- -5'
12585 5' -53.8 NC_003345.1 + 14232 0.67 0.822526
Target:  5'- cGGAGGCAGAa--CCGCCUCuuGACUUc -3'
miRNA:   3'- -CCUUCGUUUccgGGCGGAGcuUUGGG- -5'
12585 5' -53.8 NC_003345.1 + 23571 0.67 0.831439
Target:  5'- -aGGGCGAcGGCCUG-UUCGuGACCCa -3'
miRNA:   3'- ccUUCGUUuCCGGGCgGAGCuUUGGG- -5'
12585 5' -53.8 NC_003345.1 + 6089 0.68 0.778214
Target:  5'- uGGAAGCGgcuucggAAGGCUCGCUggaugaaucggugguUCGAGauguAUCCg -3'
miRNA:   3'- -CCUUCGU-------UUCCGGGCGG---------------AGCUU----UGGG- -5'
12585 5' -53.8 NC_003345.1 + 9197 0.68 0.775266
Target:  5'- aGGAGCAGAGGagauucggacaCCgGCCUUc-GACCCg -3'
miRNA:   3'- cCUUCGUUUCC-----------GGgCGGAGcuUUGGG- -5'
12585 5' -53.8 NC_003345.1 + 56535 0.68 0.772303
Target:  5'- aGAGGUcAGGGCcucgauagccgaaaCCGCCUCcGAAUCCg -3'
miRNA:   3'- cCUUCGuUUCCG--------------GGCGGAGcUUUGGG- -5'
12585 5' -53.8 NC_003345.1 + 43604 0.74 0.441959
Target:  5'- cGGAcuacGGCGAGGGgauacgucguguCCUGCUUCGAGACUCc -3'
miRNA:   3'- -CCU----UCGUUUCC------------GGGCGGAGCUUUGGG- -5'
12585 5' -53.8 NC_003345.1 + 45966 0.72 0.553243
Target:  5'- gGGAAGcCAccGGCCCaauCCUCGGggucaAGCCCc -3'
miRNA:   3'- -CCUUC-GUuuCCGGGc--GGAGCU-----UUGGG- -5'
12585 5' -53.8 NC_003345.1 + 68412 0.71 0.628281
Target:  5'- cGGcGGCGAgcGGGUUCGUCaUCGAGACaCCg -3'
miRNA:   3'- -CCuUCGUU--UCCGGGCGG-AGCUUUG-GG- -5'
12585 5' -53.8 NC_003345.1 + 33046 0.7 0.671415
Target:  5'- cGGAAGCuccacaccGAGGGCUaCGCCgggcCGAccgccAACCCg -3'
miRNA:   3'- -CCUUCG--------UUUCCGG-GCGGa---GCU-----UUGGG- -5'
12585 5' -53.8 NC_003345.1 + 13693 0.7 0.675708
Target:  5'- aGGAGCAaucGAgaacgacgaaaacacGGUCUGUCUCGGAACCUa -3'
miRNA:   3'- cCUUCGU---UU---------------CCGGGCGGAGCUUUGGG- -5'
12585 5' -53.8 NC_003345.1 + 73593 0.69 0.703426
Target:  5'- uGGGAGUAucGuaCCGCCU-GAGGCCg -3'
miRNA:   3'- -CCUUCGUuuCcgGGCGGAgCUUUGGg -5'
12585 5' -53.8 NC_003345.1 + 30630 0.69 0.745116
Target:  5'- uGGAGGCGucccguGGCCCGUgUgGGAguACCg -3'
miRNA:   3'- -CCUUCGUuu----CCGGGCGgAgCUU--UGGg -5'
12585 5' -53.8 NC_003345.1 + 47127 0.68 0.765344
Target:  5'- uGAAGCucaccGGGCCggaCGCCUCGccACCa -3'
miRNA:   3'- cCUUCGuu---UCCGG---GCGGAGCuuUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.